Gene detail

Detailed information of ANN35195-RA in Leptoseris scabra

Genomic Location: Scaffold_860__1_contigs__length_32119:28435...30284
NR annotation: WP_066014412.1, AsmA family protein [Endozoicomonas atrinae]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q05869	Adenine DNA glycosylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=mutY PE=3 SV=1
P17802	Adenine DNA glycosylase OS=Escherichia coli (strain K12) OX=83333 GN=mutY PE=1 SV=1
P44320	Adenine DNA glycosylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=mutY PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005472 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00730 all species →	HhH-GPD	HhH-GPD superfamily base excision DNA repair protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011257 all species →	Homologous_superfamily	DNA glycosylase	Interproscan
IPR004036 all species →	Conserved_site	Endonuclease III-like, conserved site-2	Interproscan
IPR044298 all species →	Family	Adenine/Thymine-DNA glycosylase	Interproscan
IPR003265 all species →	Domain	HhH-GPD domain	Interproscan
IPR023170 all species →	Homologous_superfamily	Helix-hairpin-helix, base-excision DNA repair, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42944 all species →	ADENINE DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0000701 all species →	Molecular Function	purine-specific mismatch base pair DNA N-glycosylase activity	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0016798 all species →	Molecular Function	hydrolase activity, acting on glycosyl bonds	Interproscan
GO:0032357 all species →	Molecular Function	oxidized purine DNA binding	Interproscan
GO:0034039 all species →	Molecular Function	8-oxo-7,8-dihydroguanine DNA N-glycosylase activity	Interproscan
GO:0035485 all species →	Molecular Function	adenine/guanine mispair binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35195-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.