Gene detail

Detailed information of ANN35203-RA in Leptoseris scabra

Genomic Location: Scaffold_1172__1_contigs__length_29480:16613...23152
NR annotation: CAE7698204.1, ddx17 [Symbiodinium sp. CCMP2592]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN35203-RA

ATGTCAGACAGTTTGGGGTTTCCCCATGGAAAATGGGGCTGCACAACATACCAACAGACTTCCAGATCAGCTGACACGAACATTCGACGCCTGGCACTGCCTGCCGATGATTTGTGGGACGAATGTGGTGGGAATCCCCGCCGGGGTCTCTCAGTTGGACTGGAAACTGACTGCTATGATTTTGGGAAACGCTTGCGTGGGTATGGAGAGTTCAGCGGAGCATCTTTTCGGGAAAATCTTTTGGGAACTCAGGTGGCAGCAGCTGGTGGCTTTGCAGCAATGCAACATGGGTGCAGTGATGCAAGGTCCAGGCTGGACTCCCAGTGCTCCAGCATCTCCAGCCCAGTCGGTGTCTGCATCAGTGGCACCAGCCATGCGAACGGCGCCCGCTGTAGGCAGCCAAGGGCCCAGCGAGACACCTGTGCGGCAGGTCATCAGCCGTGTTCCAGCACCCAAAGCCAAAGCCAAGGCCCAGAATGGTGTGCTGGTGCGGCTCTCCAGCCATGTGCAAGACTTCGACGACCGCTTGGATGCCAAAGGCGTTCAACTGCAAGACCTGGTGTTGCGAAGCTTGGGCCGAGAGGCGCCGAGACTCGCTGGGATCCCTCGCCTGCGCAGCCCCGTGCCATTTGCGGCAGGTCGGTGGGCGGACAAAGTCGGAGAAGAGCATCCAGGTCAGTGACAGTGAAGAAAGCAGAGGCCACCGTGTATTTGTGTGTATTCGCAAAACCAGCACTGGCCTCAAAGATTCTCGGTATATCACGGCTTTGCCACGTTTCTGAACGCAGCTATCCATTCACAGCATGGCCCGCCAGGCAGACCAGCTCGAAGGCCCCCACGGCCGTCGCCAAGCCCCAGCGACTCGGTGTCAGCACAGGAGACCTGGGTGGACTCGGCCGAGAGGCGAAGGCGTCTTGCTGGCCCGTGATCACCTCTGGTTGTGATGTCATTGGAGTCTCCGCTACAGGGAGCGGCAAGACCCTGGCCTTCCTGGTACCCGCTGTGAATCGGCTGATGCAGCTGCCTTTTGGGCGACGGCCTGCCGCGGCCTGCCCAGGGGTTCAAGGGAGACTAGGGCGGTGGCATTGTAACTATTGTTGGTTTCCTTGTGGGATTTTGATTTTTGCTGGAGCTCATAGGATCAATGGAGCCTTGGAAGCAAAGTTCATATCCAGCAAATATTTTCAAGCTCCTGTTGTGGAAATTTGCGTGGGGGTAGTAGTTTCTAGGCCTGTGGTGAGTCAGTCCAAGGACCAAATTCACGAAGAGGGCAACAAGTTCACATCGAAGCTCAGGCCGACAATGCGCTCCGCCGTGATCTATGGTGGGATTGACTTTCAGCTTCAGAGGAAGGCTTTGTCTGAGGGAGTTCATTGGTGCGTGGCCACTCCTGGCCGGCTGCTGGACTTCTTGAGTCGGAAGTACTTGTCCTTGGAGAAGCTTGCGGTCATGGTCTTGGACGAAGCGGATCGGATGCTGGACCAAGGCTTTGAACACGACTTGCGAAAGATCATGTCTTACAGACCTTTGAAGCTTCAGTCGCTTCTCTTTACGGCCACCTGGGAACCATCTACAAAAGTTCAGACTCTTGCAGGTGACTTTTTGGTGGAGCCCAAGGTCATTGAGATCGCAAATGGAAGCAGGGCAGCCAACCCAAACATCCAACACCGGTTCCATGTGTGTCGCAATGAACGAGAGAAGCTGACCCGACTTGTTGAGCAGATTGATCAGCTTGTGGATGAAGAGAAGTTGATCGTTTTCCTCAACACCAAGGTGGGCTGTTTGGAAGTCCAGTCCAGCTTGACCCGTTTGCGGAAGCAATGTTTTGTGTTGCAAGGAGATATGGATCAGGCAAGCAGGGAGGTTTCTTTGGCAGCTTTCAAAAACTGCAAGCCGGGAGTTCTGGTAGCCACAGATGTGGCAGCTCGAGGGTTGGACATTGAGAATGTGATGGTGGTTGTAAACTATGATTTGCCAACGGCAAGTGATACATTTGTGCATCGGGTGGGACGTACTGGTCGTGCTGGAAAGCATAGAGTTGCAGTGACCCTTCTTAGCCCTCGGGAGAAGCGTGAACGACAAGTTGCCCAAGAGGTGGCTGATTATTTAGCTGCCACTCAACATTCCTTGCCCGAACTTCTGGCATTTTTGGAGGATGACACTGGGAGTACTTTCAGTGGTGTCACTGGGGGCTATACTCACAACACTGGTTTGACGCAGCCGCAGGTTGACCTTGCAGGGCATCAGCTTGCACGTGTTTTGGCCAGCGATAAGCTCATCGTTGAAGAGACCTTGCGGCGAGGTGCAAGGGGTGGCCTGAGTGAGTTGGTGGGTGAAGCTGACATGGGTATAGGCGGTAGAGGTTGA

Transcript

ANN35203-RA

Protein

Uniprot

Uniprot term	Description
Q8W4R3	DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana OX=3702 GN=RH30 PE=1 SV=2
P17844	Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens OX=9606 GN=DDX5 PE=1 SV=1
Q61656	Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus OX=10090 GN=Ddx5 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan