Gene detail

Detailed information of ANN35205-RA in Leptoseris scabra

Genomic Location: Scaffold_960__1_contigs__length_31243:3283...3921
NR annotation: WP_207951620.1, dTMP kinase [Pseudomaricurvus alcaniphilus]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C5BU64	Thymidylate kinase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) OX=377629 GN=tmk PE=3 SV=1
A4XST1	Thymidylate kinase OS=Ectopseudomonas mendocina (strain ymp) OX=399739 GN=tmk PE=3 SV=1
A4VMR6	Thymidylate kinase OS=Stutzerimonas stutzeri (strain A1501) OX=379731 GN=tmk PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0016399 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02223 all species →	Thymidylate_kin	Thymidylate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR018094 all species →	Family	Thymidylate kinase	Interproscan
IPR039430 all species →	Domain	Thymidylate kinase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10344 all species →	THYMIDYLATE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004798 all species →	Molecular Function	thymidylate kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006227 all species →	Biological Process	dUDP biosynthetic process	Interproscan
GO:0006233 all species →	Biological Process	dTDP biosynthetic process	Interproscan
GO:0006235 all species →	Biological Process	dTTP biosynthetic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00943	tmk, DTYMK; dTMP kinase	EC:2.7.4.9	Pyrimidine metabolism	ko00240	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.