Gene detail

Detailed information of ANN35208-RA in Leptoseris scabra

Genomic Location: Scaffold_960__1_contigs__length_31243:21948...22851
NR annotation: WP_216097695.1, ribonuclease E activity regulator RraA [Aestuariicella albida]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6V753	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Pseudomonas paraeruginosa (strain DSM 24068 / PA7) OX=381754 GN=PSPA7_3534 PE=3 SV=1
B7VBA7	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Pseudomonas aeruginosa (strain LESB58) OX=557722 GN=PLES_35571 PE=3 SV=1
Q02KR3	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=PA14_41640 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008831 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01894 all species →	UPF0047	Uncharacterised protein family UPF0047	Family	Interproscan
PF03737 all species →	RraA-like	Aldolase/RraA	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035917 all species →	Homologous_superfamily	YjbQ-like superfamily	Interproscan
IPR001602 all species →	Family	UPF0047 protein YjbQ-like	Interproscan
IPR010203 all species →	Family	Regulator of ribonuclease activity A	Interproscan
IPR005493 all species →	Family	Ribonuclease E inhibitor RraA/RraA-like protein	Interproscan
IPR036704 all species →	Homologous_superfamily	Ribonuclease E inhibitor RraA/RraA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33254 all species →	4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008428 all species →	Molecular Function	ribonuclease inhibitor activity	Interproscan
GO:0051252 all species →	Biological Process	regulation of RNA metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35208-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.