Gene detail

Detailed information of ANN35217-RA in Leptoseris scabra

Genomic Location: Scaffold_170__1_contigs__length_47725:22694...24541
NR annotation: WP_054554176.1, MULTISPECIES: cell division protein ZapE [Pseudoalteromonas]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3IG26	Large ribosomal subunit protein uL13 OS=Pseudoalteromonas translucida (strain TAC 125) OX=326442 GN=rplM PE=3 SV=1
A1SA67	Large ribosomal subunit protein uL13 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) OX=326297 GN=rplM PE=3 SV=1
Q5R0K6	Large ribosomal subunit protein uL13 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 GN=rplM PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008178 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03969 all species →	AFG1_ATPase	AFG1-like ATPase	Family	Interproscan
PF00572 all species →	Ribosomal_L13	Ribosomal protein L13	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023563 all species →	Conserved_site	Large ribosomal subunit protein uL13, conserved site	Interproscan
IPR005654 all species →	Family	ATPase, AFG1-like	Interproscan
IPR036899 all species →	Homologous_superfamily	Large ribosomal subunit protein uL13 superfamily	Interproscan
IPR005822 all species →	Family	Large ribosomal subunit protein uL13	Interproscan
IPR005823 all species →	Family	Large ribosomal subunit protein uL13, bacterial-type	Interproscan
IPR027310 all species →	Conserved_site	Profilin conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12169 all species →	ATPASE N2B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0032153 all species →	Cellular Component	cell division site	Interproscan
GO:0051301 all species →	Biological Process	cell division	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35217-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.