Gene detail

Detailed information of ANN35218-RA in Leptoseris scabra

Genomic Location: Scaffold_170__1_contigs__length_47725:25359...27820
NR annotation: WP_138602010.1, MULTISPECIES: Do family serine endopeptidase [unclassified Pseudoalteromonas]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35218-RA

ATGGCAAAACTTCCTGTTGCTGTAAATGGTCAACAATTGCCAACCCTCGCACCTATGCTTGAGCAAATCACACCGGGCGTGGTGAGCATTCAAGTATCAGGCTCCAAAGAAGTTCGCCGCCGTGCGACTCCATTTGATGACTTTTTTGGTGTTCCTCGTGGTGGCAGTCAAAAGCGTGAATTTAGTGGCCTAGGCTCAGGTGTGATCATTGATGCAGACGAAGGATACGTGGTTACTAATAACCATGTTATCGAAGATGCCGAAAAAATGGTGGTGACCTTAGAAGATGGCCGCGAATATGACGCGACCAAAATTGGTAGTGATAAAGAGTCAGATATTGCCTTGCTGCAAATTGATGCTGAAGACTTAACAGCGCTTAAAATTGCCGATTCAGATCAGTTACGTGTAGGAGACTTCGCAGTTGCCATTGGTAATCCATTTGGTCTAAGTCACACAGTAACATCAGGTATCGTCAGTGCCCTTGGCCGTAGCGGTTTAAATATAGAGGGCTATGAAGACTTTATTCAAACCGATGCAGCTATCAACCAAGGCAACTCAGGCGGCGCGTTAGTGAACCTTAATGGTGAACTGATTGGTATCAACACTGCTATCTTAGGTGCATCAGGTGGTAATGTGGGGATTGGTTTTGCCATTCCATCTACCATGATGAAAAACCTTGTTGACCAGATCATCGAACACGGTGAAGTGCGTCGTGGCTCGCTGGGTATTTCAGGTCGACCACTTGATGCAGGCCTCGCTAAAGCACAACAGCTAGACGTAAAACAAGGCGCTTACGTTATGCAAGTAATGGATGATACAGCAGCAAGTAAAGCGGGTATCAAAGCGGGTGATGTAATCATTAGCGTTGATGGTACTGAAATTAGTGGTTTCCATGAATTACGCAGTAAAATTGCTACCCTTGGCGAAGGCAAAAAAGTAAAACTGGGCATTTACCGAGATGGCAAAATCAAAACTGTTAATGTCACATTAGATGGTGCATCAGCAACGACTGCTGCTGGCGAAGAAACGCACCCAGCTTTCCAAGGAGCGACATTAGAAAATACCCAGAAGAGTGATGGTAAGGGTGTTGAAGTAACCGGCGTACAAGCGCGTTCTCCAGCTGCTCGTGTCGGCCTTGAAGAAGGTGATGTGATCATGCAAGTGAACCGTCAACGCGTTGAAACAATCCGCGACATGAATAAGATCATCGAAAATACCAAAGAAAGCATTTCCAATCAACCGCGTTATAAACGTCAAAACACCGTTCAAGCTCTTGGCTCTGGTGTGATCATGACCCAAGACGGCTATATCTTGACTAACTACCATGTAATCAAAAATGCCGACCTCATAATTGTTACGCTCGCTGATGGCCGTCGTTTTTATGATGTACAAGTGATTGGTTTTGATACTCAAACAGATTTAGCACTGTTAAAGATCAGCGCTGAGCATTTACCAAAAATTCCAGTGAACGATAAATTTAAACCACGTGTAGGTGATGTTGTTTTAGCGATAGGTAACCCGCTTAACTTAGGTCAAACCATTACCCAAGGTATTATCAGTGCGACGGGTAAACAAAACTTAATCGATAGCCCTTACAGCAGCCTATTACAGATGGATGCTGCGATTAACGTGGGCAACTCAGGTGGCGCGTTAGTCAATTCAAGAGGTGACTTAGTCGGTATTACCTCGGCACAATTTAAAACTCATGAAAATCTCGATATTCAGGGTATTTTCTTTGCGGTGCCTTACTCGATTGCCAAAGATGTGATGGATAAACTAATAAAGCATGGCCGTGTCGTACGTGGCTATTTAGGCTTTAGTGGCACCGGCATTGATAGTACAGGTAAAGATGTTAGCGATAACTTTACGCCTGTTGCAGGTATGCGTATTTCTCAACTTGATCCATTTGGCCCAGCCTGGAAAGCAGGTATTAGAGAAACAGATATTGTAGTTAAAATTGGCGGTATTTCAGTAGCAAACCCACAACAAGTACTCGAGAAACTGGCCAATACAGAGCCAGGAAAAGAACTTGAGTTTGAAGTATATCGCAATGGCAAAATCTTAAAAGTAATGGTGACTGTTGCAGAACTCGAAGACGAGCAGTAG

Transcript

ANN35218-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P39099	Periplasmic pH-dependent serine endoprotease DegQ OS=Escherichia coli (strain K12) OX=83333 GN=degQ PE=1 SV=1
P26982	Periplasmic serine endoprotease DegP OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=degP PE=3 SV=1
P0C0V1	Periplasmic serine endoprotease DegP OS=Escherichia coli O157:H7 OX=83334 GN=degP PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002592 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF13365 all species →	Trypsin_2	Trypsin-like peptidase domain	Domain	Interproscan
PF13180 all species →	PDZ_2	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR011782 all species →	Family	Peptidase S1C, Do	Interproscan
IPR001940 all species →	Family	Peptidase S1C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22939 all species →	SERINE PROTEASE FAMILY S1C HTRA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35218-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.