Gene detail

Detailed information of ANN35218-RA in Leptoseris scabra

Genomic Location: Scaffold_170__1_contigs__length_47725:25359...27820
NR annotation: WP_138602010.1, MULTISPECIES: Do family serine endopeptidase [unclassified Pseudoalteromonas]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN35218-RA

ATGGCAAAACTTCCTGTTGCTGTAAATGGTCAACAATTGCCAACCCTCGCACCTATGCTTGAGCAAATCACACCGGGCGTGGTGAGCATTCAAGTATCAGGCTCCAAAGAAGTTCGCCGCCGTGCGACTCCATTTGATGACTTTTTTGGTGTTCCTCGTGGTGGCAGTCAAAAGCGTGAATTTAGTGGCCTAGGCTCAGGTGTGATCATTGATGCAGACGAAGGATACGTGGTTACTAATAACCATGTTATCGAAGATGCCGAAAAAATGGTGGTGACCTTAGAAGATGGCCGCGAATATGACGCGACCAAAATTGGTAGTGATAAAGAGTCAGATATTGCCTTGCTGCAAATTGATGCTGAAGACTTAACAGCGCTTAAAATTGCCGATTCAGATCAGTTACGTGTAGGAGACTTCGCAGTTGCCATTGGTAATCCATTTGGTCTAAGTCACACAGTAACATCAGGTATCGTCAGTGCCCTTGGCCGTAGCGGTTTAAATATAGAGGGCTATGAAGACTTTATTCAAACCGATGCAGCTATCAACCAAGGCAACTCAGGCGGCGCGTTAGTGAACCTTAATGGTGAACTGATTGGTATCAACACTGCTATCTTAGGTGCATCAGGTGGTAATGTGGGGATTGGTTTTGCCATTCCATCTACCATGATGAAAAACCTTGTTGACCAGATCATCGAACACGGTGAAGTGCGTCGTGGCTCGCTGGGTATTTCAGGTCGACCACTTGATGCAGGCCTCGCTAAAGCACAACAGCTAGACGTAAAACAAGGCGCTTACGTTATGCAAGTAATGGATGATACAGCAGCAAGTAAAGCGGGTATCAAAGCGGGTGATGTAATCATTAGCGTTGATGGTACTGAAATTAGTGGTTTCCATGAATTACGCAGTAAAATTGCTACCCTTGGCGAAGGCAAAAAAGTAAAACTGGGCATTTACCGAGATGGCAAAATCAAAACTGTTAATGTCACATTAGATGGTGCATCAGCAACGACTGCTGCTGGCGAAGAAACGCACCCAGCTTTCCAAGGAGCGACATTAGAAAATACCCAGAAGAGTGATGGTAAGGGTGTTGAAGTAACCGGCGTACAAGCGCGTTCTCCAGCTGCTCGTGTCGGCCTTGAAGAAGGTGATGTGATCATGCAAGTGAACCGTCAACGCGTTGAAACAATCCGCGACATGAATAAGATCATCGAAAATACCAAAGAAAGCATTTCCAATCAACCGCGTTATAAACGTCAAAACACCGTTCAAGCTCTTGGCTCTGGTGTGATCATGACCCAAGACGGCTATATCTTGACTAACTACCATGTAATCAAAAATGCCGACCTCATAATTGTTACGCTCGCTGATGGCCGTCGTTTTTATGATGTACAAGTGATTGGTTTTGATACTCAAACAGATTTAGCACTGTTAAAGATCAGCGCTGAGCATTTACCAAAAATTCCAGTGAACGATAAATTTAAACCACGTGTAGGTGATGTTGTTTTAGCGATAGGTAACCCGCTTAACTTAGGTCAAACCATTACCCAAGGTATTATCAGTGCGACGGGTAAACAAAACTTAATCGATAGCCCTTACAGCAGCCTATTACAGATGGATGCTGCGATTAACGTGGGCAACTCAGGTGGCGCGTTAGTCAATTCAAGAGGTGACTTAGTCGGTATTACCTCGGCACAATTTAAAACTCATGAAAATCTCGATATTCAGGGTATTTTCTTTGCGGTGCCTTACTCGATTGCCAAAGATGTGATGGATAAACTAATAAAGCATGGCCGTGTCGTACGTGGCTATTTAGGCTTTAGTGGCACCGGCATTGATAGTACAGGTAAAGATGTTAGCGATAACTTTACGCCTGTTGCAGGTATGCGTATTTCTCAACTTGATCCATTTGGCCCAGCCTGGAAAGCAGGTATTAGAGAAACAGATATTGTAGTTAAAATTGGCGGTATTTCAGTAGCAAACCCACAACAAGTACTCGAGAAACTGGCCAATACAGAGCCAGGAAAAGAACTTGAGTTTGAAGTATATCGCAATGGCAAAATCTTAAAAGTAATGGTGACTGTTGCAGAACTCGAAGACGAGCAGTAG

Transcript

ANN35218-RA

Protein

Uniprot

Uniprot term	Description
P39099	Periplasmic pH-dependent serine endoprotease DegQ OS=Escherichia coli (strain K12) OX=83333 GN=degQ PE=1 SV=1
P26982	Periplasmic serine endoprotease DegP OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=degP PE=3 SV=1
P0C0V1	Periplasmic serine endoprotease DegP OS=Escherichia coli O157:H7 OX=83334 GN=degP PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF13365	Trypsin_2	Trypsin-like peptidase domain	Domain	Interproscan
PF13180	PDZ_2	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478	Domain	PDZ domain	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR043504	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR009003	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR011782	Family	Peptidase S1C, Do	Interproscan
IPR001940	Family	Peptidase S1C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22939	SERINE PROTEASE FAMILY S1C HTRA-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004252	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan