Gene detail

Detailed information of ANN35220-RA in Leptoseris scabra

Genomic Location: Scaffold_170__1_contigs__length_47725:36487...37071
NR annotation: WP_054554160.1, MULTISPECIES: LPS export ABC transporter ATP-binding protein [Pseudoalteromonas]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P45073	Lipopolysaccharide export system ATP-binding protein LptB OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=lptB PE=1 SV=1
P0A9V3	Lipopolysaccharide export system ATP-binding protein LptB OS=Escherichia coli O157:H7 OX=83334 GN=lptB PE=3 SV=2
P0A9V2	Lipopolysaccharide export system ATP-binding protein LptB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=lptB PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009864 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF12399 all species →	BCA_ABC_TP_C	Branched-chain amino acid ATP-binding cassette transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051120 all species →	Family	ABC Transporter, Amino Acid and LPS Transport	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030921 all species →	Family	LPS export ABC transporter, ATP-binding protein LptB	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR032823 all species →	Domain	Branched-chain amino acid ATP-binding cassette transporter, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45772 all species →	CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0043190 all species →	Cellular Component	ATP-binding cassette (ABC) transporter complex	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06861	lptB; lipopolysaccharide export system ATP-binding protein	EC:7.5.2.5	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.