Detailed information of ANN35223-RA in Leptoseris scabra

Genomic Location: Scaffold_1238__1_contigs__length_28898:12815...13369
NR annotation: WP_269673092.1, tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB [Endozoicomonas sp. GU-1]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3K6B7tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=miaB PE=3 SV=1
Q4ZN97tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=miaB PE=3 SV=1
Q48DN8tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=miaB PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0012304 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04055
all species →		Radical_SAMRadical SAM superfamilyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007197
all species →		DomainRadical SAMInterproscan
IPR023404
all species →		Homologous_superfamilyRadical SAM, alpha/beta horseshoeInterproscan
IPR020612
all species →		Conserved_siteMethylthiotransferase, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43020
all species →		CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0051536
all species →		Molecular Functioniron-sulfur cluster bindingInterproscan
GO:0051539
all species →		Molecular Function4 iron, 4 sulfur cluster bindingInterproscan
GO:0035596
all species →		Molecular Functionmethylthiotransferase activityInterproscan
GO:0035600
all species →		Biological ProcesstRNA methylthiolationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN35223-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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