Gene detail

Detailed information of ANN35234-RA in Leptoseris scabra

Genomic Location: Scaffold_158__1_contigs__length_48631:37730...39698
NR annotation: CAI4001829.1, unnamed protein product [Cladocopium goreaui]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P36428	Alanine--tRNA ligase OS=Arabidopsis thaliana OX=3702 GN=ALATS PE=1 SV=3
P40825	Alanine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ALA1 PE=1 SV=3
Q54Y20	Alanine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=alaS PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0025974 (this species only)

Pfam domain

No Pfam domain signature was detected for ANN35234-RA. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR018165 all species →	Domain	Alanyl-tRNA synthetase, class IIc, core domain	Interproscan
IPR050058 all species →	Family	Alanine--tRNA ligase	Interproscan
IPR018163 all species →	Homologous_superfamily	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11777 all species →	ALANYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004813 all species →	Molecular Function	alanine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006419 all species →	Biological Process	alanyl-tRNA aminoacylation	Interproscan
GO:0002161 all species →	Molecular Function	aminoacyl-tRNA editing activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18420	TARBP2; RISC-loading complex subunit TARBP2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.