Gene detail

Detailed information of ANN35247-RA in Leptoseris scabra

Genomic Location: Scaffold_58__1_contigs__length_77876:7289...9835
NR annotation: WP_142929077.1, sigma-54 dependent transcriptional regulator [Exilibacterium tricleocarpae]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35247-RA

ATGGCCCGCCCCACGGGTTTACCCGAAGAGCAAATTCTCACGGCGCGAATGCTCTATTTTGGTAAAAATATCGATTACGCCGCCCAGGCTGAAGAAGATTTACAATTTATTCGTAATCTTCCTGGTGTGATTAATGCGACCCAGGTTAACTCGATTCCATTGGGACAGGGCGGCAGTAACTCAACTCTCTGTTATGTCCCTAGTGGCAATGGTGACGATGAATGCCCAAGCTCATCGGCCATTTACAATGGCGGCTATCATCTTTTGGACACCTTAGGTTTATCCATATCATCAGGCCGAGGCTTTCGTCCTGAAGAAGTCACAGGTAGTGGTTTTAATATCAGTGACGCAAGTACCATCATAGTCACCCGAGCTTTAGCCGATCGTTATTTCCCGAATGGCGATGCCCTAGGCAAAACCCTTTATTCGGCGAAGAACCCGCTCACCATTATCGGTATCGTTGACCGTCTCCAAAGCCCTTTTGTAACAGGTGATGAAGAAGCCGCTGAGTACAGTTCAATAATGCCGATTAATAGTCATGAGTTCTTTACCCTTCTTATGATTAGAGCCGAAGCGGACGCTATCCCTGGAATACAAAGGGATCTAGAAGCTAATCTCATCAAACTCAATGATCGTCGTGTTATCGATCGCATCAATACCATGCAGGAGACTAGACAAAGAGTCTATGGCGATGATCTCGCTATGCTAGTGCTTCTCACCAGTGTGATCATTTTATTGGTGTTAATTACCGCCTTAGGCACAGGCGGACTTGTCAGCTTCACGGTGGCTAGTCGACAAAAGCAAATTGGCACACGCCGCGCCCTCGGTGCGCGTAAGGTAGATATACTCAGCTATTTCCTGGTCGAGAATGGTTTAATTTGCAGTGTCGGGATTATTATCGGCATCGCACTTGCCGTTGGCCTCAACCAATACTTGATGCAAACTTATGAGCTACAACGCCTAACGCTGGAGTATATCGGTATCACTATGGGTCTACTCTTTCTGGTGAGTCAGGGCGAGCAGCTAGGTGCTCGCTTGAGTTTTAGCCCCTTGGCCCATCAAAGTTTTAACCGTGGAACAACAGACGTGATACTCATTGTCGACGATAATCCTGCTATCTGTGAAGCGCTGACTCTTCTGCTGAGTCTTCATGACTATGACACCCTAACCGCCTCTACCCCCGAAGAGGCCCTAGCCTTGGTGGATAAACGGGAAATTCATTTGGTGATTCAAGATATGAATTTTCAGGCAGATACCACGTCGGGAGACGAAGGCCGCACGTTATTTTTTCAACTCCGTGAAAAAAATCCAGACCTCCCCATTATTCTTATGACAGCTTGGACGAACCTCACCATGGCGGTGGAGCTGGTGAAAGCCGGGGCTGCGGATTACCTGGGTAAACCCTGGGAAGACGATAAGCTGTTGGTGAGTGTGGCGAATCTCTTAGAGATTGCAGATTTACACCGAGAGAACCGCCGTTTACGTGAACAAGCATCCATTCATCAGCAAATGCGCTCGACCCTTGAATCTGAGCACCAATTGTGTGGCACGGTTTACCAAAGCCCTTTGATGCATCGTTTGGTGGATATGGCCATTCAGGTGGCACCGGCGGATGTGCCTATTCTCATCACAGGCCCGAACGGCGCTGGAAAAGAAAAGATTGCCGAAATTATTCAGGCAAATTCTCGCCGTCAAGATAAGCCTTTCATCAAGGTGAATATTGGCGCCTTGCCCGCCGAGTTGTTAGAGGCAGAACTTTTTGGCGCTGAAAAAGGCGCTTATACCGGCAGCGACAAACGTCGCATTGGCCGTTTTGAGGCGGCCAATGGTGGTACTTTGTTTTTAGATGAAATGGCGAACCTGTCTTTAGAAGGACAACATAAGTTATTGCGGGTTTTACAATCCGGTGAATTTGAGCGGGTGGGCAGTTCTGTTACCCAAACCGTGGATGTGCGTATCGTTACCGCCACTAATGAAGATTTACCGGCCGCTATTGAGGCGGGGCGTTTTCGTGAAGACTTATACTATCGGTTAAACGTGATTGAACTCAAAGTTCCGCCTCTCGCCGAACGCAAAGAAGATATTCCATTGTTAGCCCAGGCGTTTATTCAGGGCATCAATCCCAACATCCGTTTACCCGAAGAGGTAGAATCTCAGCTAAGCCAGTATCATTGGCCGGGTAATGTTCGTGAATTGTACAATGCGGTGCAACGGGCTTGTTTACTGGCTAAACACGAGTGTCTAGCACTAGTGGACTTTGCTCTCCCCAACCAAGCCGCGACTCCCAGCGACGCCAAAACCTCCGTGAATGCCGCCGAGCTGTCTCTGGAGCGAATTCAAGCGGCCATTGACAATAATCAGGGCGTTATTGCTCGCGCTGCCCGTGAACTGGGTATTAGTCGACAAGCGCTTTATCGTCGACTAGAAAAACTGAATAACGGTTCTGCACCGCCCCATTAA

Transcript

ANN35247-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8Z333	Transcriptional regulatory protein ZraR OS=Salmonella typhi OX=90370 GN=zraR PE=3 SV=1
Q9HU19	C4-dicarboxylate transport transcriptional regulatory protein DctD OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=dctD PE=3 SV=1
Q8X613	Transcriptional regulatory protein ZraR OS=Escherichia coli O157:H7 OX=83334 GN=zraR PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02687 all species →	FtsX	FtsX-like permease family	Family	Interproscan
PF02954 all species →	HTH_8	Bacterial regulatory protein, Fis family	Domain	Interproscan
PF12704 all species →	MacB_PCD	MacB-like periplasmic core domain	Family	Interproscan
PF00158 all species →	Sigma54_activat	Sigma-54 interaction domain	Domain	Interproscan
PF00072 all species →	Response_reg	Response regulator receiver domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001789 all species →	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR011006 all species →	Homologous_superfamily	CheY-like superfamily	Interproscan
IPR003838 all species →	Domain	ABC3 transporter permease protein domain	Interproscan
IPR002197 all species →	Domain	DNA binding HTH domain, Fis-type	Interproscan
IPR025943 all species →	Binding_site	Sigma-54 interaction domain, ATP-binding site 2	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR025944 all species →	Conserved_site	Sigma-54 interaction domain, conserved site	Interproscan
IPR002078 all species →	Domain	RNA polymerase sigma factor 54 interaction domain	Interproscan
IPR025857 all species →	Domain	MacB-like periplasmic core domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32071 all species →	TRANSCRIPTIONAL REGULATORY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35247-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.