Detailed information of ANN35251-RA in Leptoseris scabra

Genomic Location: Scaffold_58__1_contigs__length_77876:71748...73982
NR annotation: WP_122426283.1, GDP-mannose 4,6-dehydratase [Pseudomonas viridiflava]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q56598GDP-mannose 4,6-dehydratase OS=Vibrio cholerae OX=666 GN=gmd PE=3 SV=2
P0AC90GDP-mannose 4,6-dehydratase OS=Escherichia coli O157:H7 OX=83334 GN=gmd PE=3 SV=1
P0AC89GDP-mannose 4,6-dehydratase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=gmd PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003533 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16363
all species →		GDP_Man_DehydGDP-mannose 4,6 dehydrataseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016040
all species →		DomainNAD(P)-binding domainInterproscan
IPR036291
all species →		Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR006368
all species →		FamilyGDP-mannose 4,6-dehydrataseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43715
all species →		GDP-MANNOSE 4,6-DEHYDRATASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008446
all species →		Molecular FunctionGDP-mannose 4,6-dehydratase activityInterproscan
GO:0019673
all species →		Biological ProcessGDP-mannose metabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01711gmd, GMDS; GDPmannose 4,6-dehydrataseEC:4.2.1.47
O-Antigen nucleotide sugar biosynthesisko00541deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP