Gene detail

Detailed information of ANN35256-RA in Leptoseris scabra

Genomic Location: Scaffold_145__1_contigs__length_50006:5085...8874
NR annotation: WP_114695432.1, preprotein translocase subunit SecA [Motiliproteus coralliicola]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35256-RA

ATGCCCGTGGTGGTTGCTGCCGTTTTATCTATCGCGCTCCTCATTTGTGCAAGCTATCTTGTTTATCAAATTTTCTCGCAAGCAGATGACAGTGTGTTGGAGGCTAACTTTGTCGCTGAATGGCAAAGTCGTATTCAACACCAACAGGCTGCAATCGACACACTCAACCAAAACTCTGAAGAAGAGTTTATGGCTTTATCCCTTAAAATGGCTGAGCTGCAAGCTCGCTTAATGCGTCTTGATGCATTGGGTGAAAGACTTACCGTTGTGGCTAACTTAGATAAGGGCGAATTTGATTTTTCCTCTGAACCACCTCTGGGTGGGCCTGGAAATCTGGAGCTGAGTGAAGATTATGAAATGCCAGCGCTTACGCAAGTCATTCAAGAATTAGCGTCACAAATCGATAATCGAGAACAGCAACTCGATGTTTTGGGTGATCTCATTGGTGACAAATCTATTCGTAGTGACATTTTTCTGACTGGGCGTCCTATTAAAAAAGGCTGGATGAGTTCTCGCTATGGTCGTCGCACCGATCCTTTCAATGGACGTTTAGCTTGGCATGCGGGTGTCGACTTTGCGGGTAAAGCTGGAGCAGATATTATTTCTGTTGCCGCTGGCGTTGTGACCTGGTCTGGTGATCGCTATGGTTATGGTGTCATGGTGGAAGTGAATCATGGTGGTGGCTTTGTCACTCGTTACGCCCATAACAAAGAAAACTTAGTGAAAGTCGGTGATGTTGTTAATAAAGGGCAAGTCATCGCTACTATGGGTAGCAGTGGGCGTTCTACGGGACCCCATGTGCACTTTGAAGTCTTAAAAAATGGTAAACATGTCGATCCGATTTTCGGTAGTAAGAATGAAAGAGAGGTTAAACGCCTCGGTAAAATTGTTCAGCAAATTAACGGATTTGAGTCCGGATTAGAAGCTTTAACAGATGAGCAGTTGCGAGAAAAAACAACAGCCTTTAAGCAGCAGTTTTCTGAGGGGAAAAGTCTAGAGCAAATGCTGCCCGAAGCCTTTGCTGTTGTGCGAGAGGCGAGCCGTCGCATTATGGAAATGCGTCACTTCGACGTACAGATGATGGGAGGTATTACCCTTCATTCCGGTAAAATCGCTGAAATGCGAACAGGTGAAGGTAAAACCCTGGTGGCAACCCTGGCGGCTTATCTGAATGCCTTGACGGGTAAGGGCGTACATGTTGTTACCGTCAATGATTATTTGGCCCGTCGTGATGCCGACTGGATGGCGCCTCTATATCGATTTCTGGGGTTAGAAGTTGGAGTCATTTTATCTGGCCAGAGTAATGAGGAAAAGCGTCAAGCTTATGCGGCTGATATCACCTATGGGACCAACAATGAGTTTGGTTTCGACTATCTTCGCGACAATATGGCTTTTAGCAGCGAAGATAAAGTTCAAGGCGAATTACACTTTGCGGTTGTTGATGAGGTTGATTCGATTCTCATTGATGAAGCCAGAACGCCGTTGATTATTTCTGGCGCCTCTGAAAACAGCTCCGAAATGTATCAAGCTATTGACAAACTCATTCCCAAGTTAGCGCCTCATGTTGATGCCGAAGAGGGTGAGGAAGAGCAGCTAGGTCACTATCGTATCGACGAAAAGCAAAAAAGCGTTGAACTGACCGAAGAAGGTCATGAGTTTGTTGAAGGTTTATTGCTTGATGATGGTATGCTCGAAGAAGGCGATAGCCTGTACGCAGCCAGCAATTTAAATATTTTACACCATGTGTTAGCCGCTTTAAGAGCCCATGTGCTCTTTACCCGTAATGTTGATTATATTGTTCAGAACCAGCAAGTGGTTATTATCGATGAGCATACAGGTCGTGCTATGCAGGGCCGTCGTTGGAGTGATGGTTTACATCAAGCGGTAGAAGCTAAAGAAGGTGTGCCTATTCAACGTGAAAGTCAGACCTTAGCATCGACAACCTTCCAGAACTATTTCCGTCTTTACGACAAATTAGCAGGCATGACGGGAACAGCGGATACAGAAGCGTTTGAGTTTCAGCAAATTTATGGTTTGGATGTTGTAGTCATTCCCACCAACAAACCCACGTCCCGTGATGATATGAACGATCTTGTTTATCTCACGCGAGAAGAGAAATACGAGGCGATCATTGAGGATATTGAAGCTTGCCAAAAAGCAGGGCGTCCCGTTCTTGTGGGAACTTCTTCGATTGATTCGTCCGAAATTTTATCGACGGCAATGAAAAAAGCGAAGATAGAGCATAATGTCTTGAACGCGAAATTTCATGAGAAGGAAGCCGAAATTATTGCCCAAGCCGGTAAAGCTGGGTCTGTGACTATTGCAACGAATATGGCAGGGCGCGGGACTGATATTGTGCTCGGTGGGAATTGGGAAGCCGAGGTTGCAGATTTGGGTGTAGAGCCCGAAGAGACAAAAGTAAAAGCTATTCGTGAAGCTTGGCAAAAGCGCCACGATGATGTGCTAGCCGCCGGTGGTTTGCACATTATTGGTACTGAACGTCATGAGTCTCGCCGTATCGATAACCAGCTTCGCGGTCGAGCAGGTCGTCAGGGTGATCCTGGTTCTTCGCGTTTTTATCTTTCTCTGGAAGATAACCTGATGCGTATTTTTGCCTCTGACCGAGTTGCTCGTATCATGCAAACGCTTGGCATGGAAAAAGGCGAAGCCATTGAGCATCGTATGGTGAGCAATGCCATTGAAAAAGCGCAGCGTAAGGTTGAAGGTCGTAACTTTGATATCCGTAAACAGCTGCTCGAATACGATGATGTGGCTAATGATCAACGTCAAGTCGTTTACGGCCAGCGTAACGATCTGATGTCGAGCGAAGAGATTGCCGATACTATTAAGGCGATTCGCGAAGATGTTGTGGAAGAAGCGATCAACTTGTACATTCCGCCTCAGAGTCTCTCTGAGCAATGGCAAGTGGAACCCCTAGAAGAGCATATTAAGAAAGAATTTGCTCTAGAGCTGCCCATACAGCAATGGCTTGATGAAGATACGAATCTCTACGAAGAGCCACTACGACGTAAAATTCATGAGGCTGTAGTGTCAGCCTATGAAGAAAAAGAAAACATTGCCGGTGCAGAAAATATCCGTCGTTTTGAAAAACAAGTGATGCTGCAAGTGTTAGATAATTCCTGGAAAGAGCACCTCGCAACGATGGATTTATTGCGTCAAGGGATTCACTTACATGGTTATGCGCAAAAAAATCCTAAGCAAGAGTATAAGCGTCAGTCGTTTGCTTTATTTCAAGAACTATTAAGTAAAATTAAAGAAGAAACGATTCGAATTTTGAGTCATGTTCAGGTGATGAAGCCTGAAGAAGCTGAAGAGATAGAACGCCAACGGCGTGAGGCCCTGGCCAAGCAGATGCAGTTTCAACATGCACAAGCTGCGTCAGCCATGGAATCACCAGAGTCTGTGCCTGAATCGCCTACGGCCGATGACCCAGGTAATGCCGAACAACCTTTTGTTCGCGATGGTAAAAAAGTTGGGCGTAATGAACCTTGTCCTTGTGGTTCCGGTAAAAAATTCAAACAGTGTCATGGTCGCATCTAA

Transcript

ANN35256-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6VB75	Protein translocase subunit SecA OS=Pseudomonas paraeruginosa (strain DSM 24068 / PA7) OX=381754 GN=secA PE=3 SV=1
B7UZI1	Protein translocase subunit SecA OS=Pseudomonas aeruginosa (strain LESB58) OX=557722 GN=secA PE=3 SV=1
Q9LCT3	Protein translocase subunit SecA OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=secA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011145 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07516 all species →	SecA_SW	SecA Wing and Scaffold domain	Family	Interproscan
PF21090 all species →	P-loop_SecA	SecA P-loop domain	Domain	Interproscan
PF07517 all species →	SecA_DEAD	SecA DEAD-like domain	Domain	Interproscan
PF01551 all species →	Peptidase_M23	Peptidase family M23	Family	Interproscan
PF01043 all species →	SecA_PP_bind	SecA preprotein cross-linking domain	Domain	Interproscan
PF02810 all species →	SEC-C	SEC-C motif	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000185 all species →	Family	Protein translocase subunit SecA	Interproscan
IPR011116 all species →	Domain	SecA Wing/Scaffold	Interproscan
IPR014018 all species →	Domain	SecA motor DEAD	Interproscan
IPR044722 all species →	Domain	SecA, C-terminal helicase domain	Interproscan
IPR020937 all species →	Conserved_site	SecA conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011115 all species →	Domain	SecA DEAD-like, N-terminal	Interproscan
IPR036670 all species →	Homologous_superfamily	SecA, preprotein cross-linking domain superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011055 all species →	Homologous_superfamily	Duplicated hybrid motif	Interproscan
IPR036266 all species →	Homologous_superfamily	SecA, Wing/Scaffold superfamily	Interproscan
IPR016047 all species →	Domain	Peptidase M23	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011130 all species →	Domain	SecA, preprotein cross-linking domain	Interproscan
IPR004027 all species →	Conserved_site	SEC-C motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30612 all species →	SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006605 all species →	Biological Process	protein targeting	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0017038 all species →	Biological Process	protein import	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0031522 all species →	Cellular Component	cell envelope Sec protein transport complex	Interproscan
GO:0043952 all species →	Biological Process	protein transport by the Sec complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03070	secA; preprotein translocase subunit SecA	EC:7.4.2.8	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.