Gene detail

Detailed information of ANN35261-RA in Montipora grisea

Genomic Location: Scaffold_7337__1_contigs__length_25054:10692...17080
NR annotation: NIT13103.1, TetR family transcriptional regulator [Candidatus Dadabacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN35261-RA

ATGAAAGAACTTATAATCGCCTTAATTTTAACTTTATCTTTTTCTATTACTGGGTTTTCACAGGCCGACGCCGAGGAGCCGGAATACTACAAGGGACCTAATTATCCCGATACCGAAGAGGTAAGCAGCAGGGAAAGGTGCAGGGATATCTGCCAGGAGATAGATGCCAACGGAACCTGCATAAAGGTTGAAGTAAGAATTGCAGAAAAACAAATCCTCTCTGACCTTGCCACGGGAAAGACCCTGGGCTGTTTTGCCCTGAGTGAGCCGGAGTCTGGTTCAGATGCAGCAAGTATAAACACAACGGCCGTTAAGAATGGCAGCGAGTATGTGCTCAATGACGTAAAAGTGCCCGAATCTTATCTTCTTGGCGGGGAAGGAGACGGATTTAAGATTGCAATGAAGACACTTGACCTCGGCAGGATAGCCGTCGCTTCACAGGCAGTAGGTATTGCACAGGCAGCACTTGATGCTTCCGTGGAATATTCCATGGAAAGAAAGACTTTCGGTTCACCCATATTCGACCACCAGGGCATACAGTTTATGATTGCCGAAATGTCTACAAGGGTAGAAGCAGCCAGGCTGCTAACATGGCAGGCAGCGGGACTTAAGGATAAAAACCTTAAATTCACAAAACAGTCGGCAATGGCAAAACTGTTTGCAGCCGAAACCGCTATGTGGGTAACGACAAAAGCCATCCAGATTCACGGGGGCAATGGATATACTCAAGACTATCCCGTGGAAAGGTCAGTAGAACTGTTTGTTAAAAAAGGTTACCACCAGACAACCGTAAGAGAGATCGCCAAAGCATCAGGAATGAGCATGGGTGCACTCTATGACTATATATCGACGAAAGAAGATATCCTGTTCCTTGTTTGCGACCATATCCATTCAACTGTAAGCAGCAAGATAACCGGCTCATTTTCGGTAAAAAACAACTCTATTCAGAATTTGAAGAGCGCGATACGGGAGTACTACACCATTATCGATGAAATACAGGATTACATGCTCCTGCTTTACCAGGAAACCAAGTCTCTAAATAAGGATGCGCGTAAATATATATTCAATGCCGAACTTGAACTTACGGCTATTTTTGAGGACATCCTGGCGCAGTGCATATCGGAGAAAACCATAAAGTTAAGTCAAAAAGATATCTCACTTGTAGCACATAACATAATGGTCACAGGACAGATGTGGGCCTTTAGAAGGTGGGCACTCAGCCCTGAACTTGCAATGTCTACCGAAAGGCCGGACAAGGTGCTTGGGGTACATTTTTTCAACCCCGCCCCGGTGATGAAACTTGTGGAAATTGTTTCGACCCCGATAACTTCCGAGGACACCCTAAATACAGGCAAAGAATTTGCCGTCAGCCTCGGCAAAGACCCGGTAGTTACAAAAGACAGGGCCGGGTTTATTGTTAACAGGATTTTGCTTCCAATGATTAACGAGGCGATATTTGTTTTTGATGAGAATATGGCAACTGCCGAAGATATTGATAAGGCAATGAAACTCGGTACCAATCAGCCGATCGGCCCTCTCGCACTTGCCGACCTGATCGGCCTTGATGTTACGCTTGATTGTACTAAGCATGAGAACAGTATCGGCACACTTACAATTAACAAGGAAAGGTCGATGAATACGCTAAGCCTTGAGACCCTCGCCGAGCTCAACAATTTTACGGCAAATGAACTGGTAAATAGCGGACTGAAAGCACTCGTTGTAACCGGTGCCGGCAGCAAGGCTTTCGTGGCAGGCGCGGATATAGGGCAGATGAAGGAGATGACACGTGAGGAGTTTGAACACTACTGCAGACTTGGCCACGATACGTTTAATGCACTACAGCATGCACCGTTTCCCGTAATTGCTGCGGTTAATGGTTATGCACTTGGGGGCGGCCGAAACCTTGCAGAAAAATACGGGATATCCAAACAGCAGCAGGACGAATTTGCATACAGCAGCCAGATGAAAGCAAAATCGGCCCTCGAAGCCAACCGCTTTGAAAGCCAGATAGTACCTATGGAAATACCTCAGAGAAAAGTTCTGTCTTTATCATTTGCTCCTCTCACCGCATTCTCGGCAGAATGGGCACCTCTCGGCAAAATGAGTATGGGAGGTATGAACAACGTAACCATCTACGTAGACAATGCCTCAATTAAAGAAGACGAAAGAAGTGCTGATTACAAAAAGTCCTGGGTAAAATTTGAACTCCCAAAGAACGTAAAATCCGACTACAGTGATGATTTTTACAGGTCGAGAAAAGAGCTTTATTACTTCCACTGCAGCCAGGGCCTGTATACGGTGCCCAAGTAA

Transcript

ANN35261-RA

Protein

Uniprot

Uniprot term	Description
P45867	Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) OX=224308 GN=acdA PE=2 SV=1
Q07417	Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Acads PE=1 SV=2
P15651	Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Acads PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16747	Adhesin_E	Surface-adhesin protein E	Domain	Interproscan
PF00725	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF00440	TetR_N	Bacterial regulatory proteins, tetR family	Domain	Interproscan
PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02737	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan
PF00108	Thiolase_N	Thiolase, N-terminal domain	Domain	Interproscan
PF00378	ECH_1	Enoyl-CoA hydratase/isomerase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008927	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR031939	Domain	Surface-adhesin protein E-like	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR006108	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR006089	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001647	Domain	DNA-binding HTH domain, TetR-type	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR009075	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR016039	Homologous_superfamily	Thiolase-like	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR046373	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR006176	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR037069	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR020616	Domain	Thiolase, N-terminal	Interproscan
IPR001753	Family	Enoyl-CoA hydratase/isomerase	Interproscan
IPR029045	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43884	ACYL-COA DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0003995	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0016746	Molecular Function	acyltransferase activity	Interproscan
GO:0070403	Molecular Function	NAD+ binding	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0016747	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan