Genomic Location: Scaffold_750__1_contigs__length_33377:1064...3010
NR annotation: MBO9481116.1, fumarylacetoacetase [Salinisphaera sp. G21_0]
Species Leptoseris scabra · all data for this species · gene families
| CDS |
| ANN35274-RA |
| Transcript |
| ANN35274-RA |
| Protein |
| ANN35274-RA |
| UniProt accession | Description |
|---|---|
| Q94272 | Fumarylacetoacetase OS=Caenorhabditis elegans OX=6239 GN=fah-1 PE=2 SV=1 |
| P16930 | Fumarylacetoacetase OS=Homo sapiens OX=9606 GN=FAH PE=1 SV=2 |
| P35505 | Fumarylacetoacetase OS=Mus musculus OX=10090 GN=Fah PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004340 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01557 all species → | FAA_hydrolase | Fumarylacetoacetate (FAA) hydrolase family | Family | Interproscan |
| PF09298 all species → | FAA_hydrolase_N | Fumarylacetoacetase N-terminal | Domain | Interproscan |
| PF13409 all species → | GST_N_2 | Glutathione S-transferase, N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005959 all species → | Family | Fumarylacetoacetase | Interproscan |
| IPR036663 all species → | Homologous_superfamily | Fumarylacetoacetase-like, C-terminal domain superfamily | Interproscan |
| IPR036462 all species → | Homologous_superfamily | Fumarylacetoacetase, N-terminal domain superfamily | Interproscan |
| IPR010987 all species → | Domain | Glutathione S-transferase, C-terminal-like | Interproscan |
| IPR004045 all species → | Domain | Glutathione S-transferase, N-terminal | Interproscan |
| IPR036249 all species → | Homologous_superfamily | Thioredoxin-like superfamily | Interproscan |
| IPR011234 all species → | Domain | Fumarylacetoacetase-like, C-terminal | Interproscan |
| IPR005955 all species → | Family | Glutathione S-transferases, class Zeta | Interproscan |
| IPR034333 all species → | Domain | Glutathione S-transferases, class Zeta , N-terminal | Interproscan |
| IPR040079 all species → | Family | Glutathione transferase family | Interproscan |
| IPR034330 all species → | Domain | Glutathione S-transferases, class Zeta , C-terminal | Interproscan |
| IPR015377 all species → | Domain | Fumarylacetoacetase, N-terminal | Interproscan |
| IPR036282 all species → | Homologous_superfamily | Glutathione S-transferase, C-terminal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43069 all species → | FUMARYLACETOACETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004334 all species → | Molecular Function | fumarylacetoacetase activity | Interproscan |
| GO:0006559 all species → | Biological Process | L-phenylalanine catabolic process | Interproscan |
| GO:0006572 all species → | Biological Process | tyrosine catabolic process | Interproscan |
| GO:0009072 all species → | Biological Process | aromatic amino acid metabolic process | Interproscan |
| GO:1902000 all species → | Biological Process | homogentisate catabolic process | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
ANN35274-RA.Genes whose expression across the transcriptome samples of Leptoseris scabra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Leptoseris scabra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
