Detailed information of ANN35275-RA in Leptoseris scabra

Genomic Location: Scaffold_750__1_contigs__length_33377:3068...4360
NR annotation: WP_020580734.1, homogentisate 1,2-dioxygenase [Endozoicomonas elysicola]
Species abbreviation LSCAB · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B2UJ73Homogentisate 1,2-dioxygenase OS=Ralstonia pickettii (strain 12J) OX=402626 GN=hmgA PE=3 SV=1
Q1D8L9Homogentisate 1,2-dioxygenase OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=hmgA PE=3 SV=1
Q828S5Homogentisate 1,2-dioxygenase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=hmgA PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005548 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04209
all species →		HgmA_CHomogentisate 1,2-dioxygenase C-terminalDomainInterproscan
PF20510
all species →		HgmA_NHomogentisate 1,2-dioxygenase N-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011051
all species →		Homologous_superfamilyRmlC-like cupin domain superfamilyInterproscan
IPR046451
all species →		DomainHomogentisate 1,2-dioxygenase, C-terminal domainInterproscan
IPR014710
all species →		Homologous_superfamilyRmlC-like jelly roll foldInterproscan
IPR046452
all species →		DomainHomogentisate 1,2-dioxygenase, N-terminal domainInterproscan
IPR005708
all species →		FamilyHomogentisate 1,2-dioxygenaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11056
all species →		HOMOGENTISATE 1,2-DIOXYGENASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004411
all species →		Molecular Functionhomogentisate 1,2-dioxygenase activityInterproscan
GO:0006559
all species →		Biological ProcessL-phenylalanine catabolic processInterproscan
GO:0006570
all species →		Biological Processtyrosine metabolic processInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00451HGD, hmgA; homogentisate 1,2-dioxygenaseEC:1.13.11.5
Styrene degradationko00643deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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