Gene detail

Detailed information of ANN35280-RA in Leptoseris scabra

Genomic Location: Scaffold_2304__1_contigs__length_19467:12122...15882
NR annotation: MCT4665358.1, chaperonin GroEL [Flavobacteriales bacterium]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0M7D9	Chaperonin GroEL OS=Christiangramia forsetii (strain DSM 17595 / CGMCC 1.15422 / KT0803) OX=411154 GN=groEL PE=3 SV=1
A6H125	Chaperonin GroEL OS=Flavobacterium psychrophilum (strain ATCC 49511 / DSM 21280 / CIP 103535 / JIP02/86) OX=402612 GN=groEL PE=3 SV=1
A5FIV1	Chaperonin GroEL OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101) OX=376686 GN=groEL PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006424 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan
PF00712 all species →	DNA_pol3_beta	DNA polymerase III beta subunit, N-terminal domain	Domain	Interproscan
PF00166 all species →	Cpn10	Chaperonin 10 Kd subunit	Domain	Interproscan
PF00484 all species →	Pro_CA	Carbonic anhydrase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001844 all species →	Family	Chaperonin Cpn60/GroEL	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR036874 all species →	Homologous_superfamily	Carbonic anhydrase superfamily	Interproscan
IPR027410 all species →	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR020818 all species →	Family	GroES chaperonin family	Interproscan
IPR022634 all species →	Domain	DNA polymerase III, beta sliding clamp, N-terminal	Interproscan
IPR027413 all species →	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR018369 all species →	Conserved_site	Chaperonin GroES, conserved site	Interproscan
IPR001001 all species →	Family	DNA polymerase III, beta sliding clamp	Interproscan
IPR011032 all species →	Homologous_superfamily	GroES-like superfamily	Interproscan
IPR046938 all species →	Homologous_superfamily	DNA clamp superfamily	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR001765 all species →	Family	Carbonic anhydrase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45633 all species →	60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0009408 all species →	Biological Process	response to heat	Interproscan
GO:0042026 all species →	Biological Process	protein refolding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0051085 all species →	Biological Process	chaperone cofactor-dependent protein refolding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:1990220 all species →	Cellular Component	GroEL-GroES complex	Interproscan
GO:0004089 all species →	Molecular Function	carbonate dehydratase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0044183 all species →	Molecular Function	protein folding chaperone	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0009360 all species →	Cellular Component	DNA polymerase III complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35280-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.