Gene detail

Detailed information of ANN35282-RA in Montipora grisea

Genomic Location: Scaffold_6287__1_contigs__length_27395:10289...11052
NR annotation: WP_159580156.1, 30S ribosomal protein S11 [Alteromonas sp. KUL106]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B4RT51	Small ribosomal subunit protein uS11 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=rpsK PE=3 SV=1
Q12ST6	Small ribosomal subunit protein uS11 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=rpsK PE=3 SV=1
A3Q9A5	Small ribosomal subunit protein uS11 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) OX=323850 GN=rpsK PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005576 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00411 all species →	Ribosomal_S11	Ribosomal protein S11	Family	Interproscan
PF00416 all species →	Ribosomal_S13	Ribosomal protein S13/S18	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001971 all species →	Family	Small ribosomal subunit protein uS11	Interproscan
IPR001892 all species →	Family	Small ribosomal subunit protein uS13	Interproscan
IPR010979 all species →	Homologous_superfamily	Small ribosomal subunit protein uS13-like, H2TH	Interproscan
IPR018102 all species →	Conserved_site	Small ribosomal subunit protein uS11, conserved site	Interproscan
IPR036967 all species →	Homologous_superfamily	Small ribosomal subunit protein uS11 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11759 all species →	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02948	RP-S11, MRPS11, rpsK; small subunit ribosomal protein S11	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.