Gene detail

Detailed information of ANN35289-RA in Leptoseris scabra

Genomic Location: Scaffold_285__1_contigs__length_42022:13315...14988
NR annotation: WP_068480986.1, choline dehydrogenase [Oleiphilus sp. HI0067]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9WWW2	Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida OX=303 GN=alkJ PE=3 SV=1
Q00593	Alcohol dehydrogenase [acceptor] OS=Ectopseudomonas oleovorans OX=301 GN=alkJ PE=1 SV=1
Q6UPE0	Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00732	GMC_oxred_N	GMC oxidoreductase	Domain	Interproscan
PF05199	GMC_oxred_C	GMC oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000172	Domain	Glucose-methanol-choline oxidoreductase, N-terminal	Interproscan
IPR012132	Family	Glucose-methanol-choline oxidoreductase	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR007867	Domain	Glucose-methanol-choline oxidoreductase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11552	GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016614	Molecular Function	oxidoreductase activity, acting on CH-OH group of donors	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00108	betA, CHDH; choline dehydrogenase	EC:1.1.99.1	Glycine, serine and threonine metabolism	ko00260	deepkoala