Gene detail

Detailed information of ANN35291-RA in Leptoseris scabra

Genomic Location: Scaffold_285__1_contigs__length_42022:37944...39627
NR annotation: WP_020409538.1, urease subunit alpha [Hahella ganghwensis]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2SDQ1	Urease subunit alpha OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=ureC PE=3 SV=1
A1SYY1	Urease subunit alpha OS=Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37) OX=357804 GN=ureC PE=3 SV=1
B4RSX9	Urease subunit alpha OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=ureC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009904 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00449 all species →	Urease_alpha	Urease alpha-subunit, N-terminal domain	Domain	Interproscan
PF01979 all species →	Amidohydro_1	Amidohydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017951 all species →	Domain	Urease alpha subunit, C-terminal	Interproscan
IPR011059 all species →	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR005848 all species →	Family	Urease, alpha subunit	Interproscan
IPR011612 all species →	Domain	Urease alpha-subunit, N-terminal domain	Interproscan
IPR050112 all species →	Family	Urease Alpha Subunit	Interproscan
IPR029754 all species →	Binding_site	Urease nickel binding site	Interproscan
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43440 all species →	UREASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0009039 all species →	Molecular Function	urease activity	Interproscan
GO:0016151 all species →	Molecular Function	nickel cation binding	Interproscan
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01428	ureC; urease subunit alpha	EC:3.5.1.5	Epithelial cell signaling in Helicobacter pylori infection	ko05120	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.