Gene detail

Detailed information of ANN35306-RA in Leptoseris scabra

Genomic Location: Scaffold_529__1_contigs__length_36323:8673...9719
NR annotation: MCG8495584.1, glutamate--tRNA ligase [Enterobacterales bacterium]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15RR1	Glutamate--tRNA ligase OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) OX=3042615 GN=gltX PE=3 SV=1
Q5QX98	Glutamate--tRNA ligase OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 GN=gltX PE=3 SV=1
A4SJD4	Glutamate--tRNA ligase OS=Aeromonas salmonicida (strain A449) OX=382245 GN=gltX PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012537 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00749 all species →	tRNA-synt_1c	tRNA synthetases class I (E and Q), catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020058 all species →	Domain	Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR004527 all species →	Family	Glutamate-tRNA ligase, bacterial/mitochondrial	Interproscan
IPR000924 all species →	Family	Glutamyl/glutaminyl-tRNA synthetase	Interproscan
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR049940 all species →	Family	Glutamyl-Q tRNA(Asp) synthetase/Glutamate--tRNA ligase	Interproscan
IPR033910 all species →	Domain	Glutamyl-tRNA synthetase	Interproscan
IPR008925 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class I, anticodon-binding superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43311 all species →	GLUTAMATE--TRNA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0043039 all species →	Biological Process	tRNA aminoacylation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004818 all species →	Molecular Function	glutamate-tRNA ligase activity	Interproscan
GO:0006424 all species →	Biological Process	glutamyl-tRNA aminoacylation	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01885	EARS, gltX; glutamyl-tRNA synthetase	EC:6.1.1.17	Prokaryotic defense system	ko02048	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.