Gene detail

Detailed information of ANN35307-RA in Leptoseris scabra

Genomic Location: Scaffold_529__1_contigs__length_36323:23665...25176
NR annotation: GEA02743.1, heme ABC transporter permease [Alteromonas sp. KUL17]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6LQ76	Vitamin B12 import system permease protein BtuC OS=Photobacterium profundum (strain SS9) OX=298386 GN=btuC PE=3 SV=2
Q9KSL2	Vitamin B12 import system permease protein BtuC OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=btuC PE=3 SV=2
Q7MLE7	Vitamin B12 import system permease protein BtuC OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=btuC PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0017982 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01032 all species →	FecCD	FecCD transport family	Family	Interproscan
PF01451 all species →	LMWPc	Low molecular weight phosphotyrosine protein phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017867 all species →	Family	Protein-tyrosine phosphatase, low molecular weight	Interproscan
IPR036196 all species →	Homologous_superfamily	Phosphotyrosine protein phosphatase I superfamily	Interproscan
IPR000522 all species →	Family	ABC transporter, permease protein, BtuC-like	Interproscan
IPR037294 all species →	Homologous_superfamily	ABC transporter, BtuC-like	Interproscan
IPR023485 all species →	Domain	Phosphotyrosine protein phosphatase I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30472 all species →	FERRIC ENTEROBACTIN TRANSPORT SYSTEM PERMEASE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0033214 all species →	Biological Process	siderophore-dependent iron import into cell	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35307-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.