Gene detail

Detailed information of ANN35308-RA in Leptoseris scabra

Genomic Location: Scaffold_124__1_contigs__length_53257:27135...28960
NR annotation: KAG1716848.1, hypothetical protein ID866_261 [Astraeus odoratus]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6VW13	Na(+)-translocating NADH-quinone reductase subunit F OS=Marinomonas sp. (strain MWYL1) OX=400668 GN=nqrF PE=3 SV=1
Q9HZL1	Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=nqrF PE=3 SV=1
A6V3A2	Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudomonas paraeruginosa (strain DSM 24068 / PA7) OX=381754 GN=nqrF PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012806 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00175 all species →	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan
PF02508 all species →	Rnf-Nqr	Rnf-Nqr subunit, membrane protein	Family	Interproscan
PF00111 all species →	Fer2	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001433 all species →	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR010205 all species →	Family	Na(+)-translocating NADH-quinone reductase subunit F	Interproscan
IPR001041 all species →	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR003667 all species →	Family	NqrDE/RnfAE	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR036010 all species →	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43644 all species →	NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0006814 all species →	Biological Process	sodium ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016655 all species →	Molecular Function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00351	nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F	EC:7.2.1.1	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.