Gene detail

Detailed information of ANN35319-RA in Montipora grisea

Genomic Location: Scaffold_3168__1_contigs__length_37893:20053...22000
NR annotation: WP_167223527.1, xanthine dehydrogenase small subunit [Pelagibius litoralis]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q12553	Xanthine dehydrogenase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=hxA PE=2 SV=2
Q8GUQ8	Xanthine dehydrogenase 1 OS=Arabidopsis thaliana OX=3702 GN=XDH1 PE=1 SV=1
P22985	Xanthine dehydrogenase/oxidase OS=Rattus norvegicus OX=10116 GN=Xdh PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013767 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01799 all species →	Fer2_2	[2Fe-2S] binding domain	Domain	Interproscan
PF00576 all species →	Transthyretin	HIUase/Transthyretin family	Domain	Interproscan
PF00111 all species →	Fer2	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan
PF03450 all species →	CO_deh_flav_C	CO dehydrogenase flavoprotein C-terminal domain	Domain	Interproscan
PF00941 all species →	FAD_binding_5	FAD binding domain in molybdopterin dehydrogenase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036817 all species →	Homologous_superfamily	Transthyretin/hydroxyisourate hydrolase domain superfamily	Interproscan
IPR001041 all species →	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR016208 all species →	Family	Aldehyde oxidase/xanthine dehydrogenase-like	Interproscan
IPR006058 all species →	Binding_site	2Fe-2S ferredoxin, iron-sulphur binding site	Interproscan
IPR005107 all species →	Domain	CO dehydrogenase flavoprotein, C-terminal	Interproscan
IPR023418 all species →	Binding_site	Transthyretin, thyroxine binding site	Interproscan
IPR036318 all species →	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan
IPR036884 all species →	Homologous_superfamily	[2Fe-2S]-binding domain superfamily	Interproscan
IPR036010 all species →	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR016167 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 1	Interproscan
IPR002888 all species →	Domain	[2Fe-2S]-binding	Interproscan
IPR023416 all species →	Domain	Transthyretin/hydroxyisourate hydrolase domain	Interproscan
IPR014307 all species →	Domain	Xanthine dehydrogenase, small subunit	Interproscan
IPR016169 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan
IPR036683 all species →	Homologous_superfamily	CO dehydrogenase flavoprotein, C-terminal domain superfamily	Interproscan
IPR016166 all species →	Domain	FAD-binding domain, PCMH-type	Interproscan
IPR002346 all species →	Domain	Molybdopterin dehydrogenase, FAD-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45444 all species →	XANTHINE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004854 all species →	Molecular Function	xanthine dehydrogenase activity	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13481	xdhA; xanthine dehydrogenase small subunit	EC:1.17.1.4	Purine metabolism	ko00230	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.