Genomic Location: Scaffold_975__1_contigs__length_31120:28717...29082
NR annotation: WP_020580792.1, iron-sulfur cluster insertion protein ErpA [Endozoicomonas elysicola]
Species Leptoseris scabra · all data for this species · gene families
| CDS |
| ANN35321-RA |
| Transcript |
| ANN35321-RA |
| Protein |
| ANN35321-RA |
| UniProt accession | Description |
|---|---|
| A1W3Q0 | Putative iron-sulfur cluster insertion protein ErpA OS=Acidovorax sp. (strain JS42) OX=232721 GN=erpA PE=3 SV=1 |
| A9C177 | Putative iron-sulfur cluster insertion protein ErpA OS=Delftia acidovorans (strain DSM 14801 / SPH-1) OX=398578 GN=erpA PE=3 SV=1 |
| A1TUF2 | Putative iron-sulfur cluster insertion protein ErpA OS=Paracidovorax citrulli (strain AAC00-1) OX=397945 GN=erpA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006372 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01521 all species → | Fe-S_biosyn | Iron-sulphur cluster biosynthesis | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR023063 all species → | Family | FeS cluster insertion protein ErpA | Interproscan |
| IPR035903 all species → | Homologous_superfamily | HesB-like domain superfamily | Interproscan |
| IPR016092 all species → | Family | FeS cluster insertion protein | Interproscan |
| IPR017870 all species → | Conserved_site | FeS cluster insertion, C-terminal, conserved site | Interproscan |
| IPR000361 all species → | Domain | FeS cluster biogenesis | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43011 all species → | IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005506 all species → | Molecular Function | iron ion binding | Interproscan |
| GO:0016226 all species → | Biological Process | iron-sulfur cluster assembly | Interproscan |
| GO:0051537 all species → | Molecular Function | 2 iron, 2 sulfur cluster binding | Interproscan |
| GO:0051539 all species → | Molecular Function | 4 iron, 4 sulfur cluster binding | Interproscan |
| GO:0106035 all species → | Biological Process | protein maturation by [4Fe-4S] cluster transfer | Interproscan |
| GO:0051536 all species → | Molecular Function | iron-sulfur cluster binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15724 | erpA; iron-sulfur cluster insertion protein | - | General function prediction only | - | deepkoala |
Genes whose expression across the transcriptome samples of Leptoseris scabra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Leptoseris scabra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
