Detailed information of ANN35322-RA in Leptoseris scabra

Genomic Location: Scaffold_528__1_contigs__length_36338:20048...21883
NR annotation: CAI4007750.1, unnamed protein product [Cladocopium goreaui]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q87PP5Glycine betaine/proline/choline/ectoine transporter VP1456 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VP1456 PE=1 SV=1
Q87NG3Glycine betaine transporter 1 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VP1905 PE=1 SV=1
Q87NZ5Glycine betaine/proline/choline transporter VP1723 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VP1723 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000591 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02028
all species →		BCCTBCCT, betaine/carnitine/choline family transporterFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000060
all species →		FamilyBCCT transporter familyInterproscan
IPR018093
all species →		Conserved_siteBCCT transporter, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR30047
all species →		HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0006810
all species →		Biological ProcesstransportInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0016021
all species →		Cellular ComponentmembraneInterproscan
GO:0022857
all species →		Molecular Functiontransmembrane transporter activityInterproscan
GO:0071705
all species →		Biological Processnitrogen compound transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN35322-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP