Gene detail

Detailed information of ANN35331-RA in Leptoseris scabra

Genomic Location: Scaffold_721__1_contigs__length_33741:30344...32569
NR annotation: WP_054553217.1, MULTISPECIES: fatty acid oxidation complex subunit alpha FadJ [Pseudoalteromonas]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN35331-RA

ATGACAGATTCAGTATTTAGTTTATCAGTGGCTGATGACGGCGTAGCCGTTGTAACCATTGATGTGCCGGGTGAAAAAATGAACACCCTGCGCAGCAGTTTTGCAGAAGATTTAAAAACCTTACTCAAAGACGCACAAGCGCAAGCAGTAAAAGGCATGGTATTTATCAGTGGTAAAAGCGATAACTTTATCGCCGGTGCTGATATTAAAATGCTTGATAGCGCCAATAGCCGTGAAGATGCATTAGCGTTAAGCGAAATGTGTCAGCAAGCATTTTTTGATATGAAAAAGCTGCCTTTCCCAACAGTAAGCGCTATTCATGGTGCTGCATTGGGCGGCGGTTTAGAGTTTGCTTTAGCGTGTGATTATCGCGTGTGTTCAGATAGTGATATCACTAAGCTTGGTTTGCCAGAAGTACAGTTAGGCTTATTACCTGGTGGTGGCGGTACTCAACGTTTACCAAAATTAGTTGGCTTGCAAAAAGCACTTGAGTGGATGCTTACAGGTAAGCAAGTGCGTGCTAAGCAAGCGAAGAAAACAGGCTTAGTAAATGACTGTGTACCACACAGTGTATTACTTGACGTTGCTAAAGAGTTTGCTCTTAAAGGTAAGGCGAAGGTTACTAAACCTAAGTTAGATCGTTTAAGCCAATTACTTGAGTCGAACCCATTTGGCCGCAATATTATTTTCAAAAAAGCACAAGAAAACGTGCTGAAGAAAACAGGTGGTCATTACCCAGCGCCTTTAGCCATTATTAAAGCGGTTCGTGCAAGTGTTGAACTTGATCAGTTAAAAGCATACAAAACTGAAGCTGAAGGTTTTGCCACGCTGGTAATGAGTGATGAGTCAAAAGCATTACGCGGTATTTTCTTTGCAACCACTGAAATGAAAAAAGAGTGGCGTAATGATGATGCACCAGCGATCGCTAAAGCGGCAGTATTAGGTGGCGGCCTCATGGGCGCGGGTATTGCCCATGTTAGTGCTGTAAAAGCGGGTGTTCCAGTGCGCATTAAAGATGTGGCTGAAAAGGGCATCAGCAATGCAATGAACTACAGCTATAAGATTTTAGATAAAAAGCAAAAGCGTCGTATTTTATCTAAAGCTGATCTACAGCAAACCATGAACCGCATTACCGGTACTACCGATTACAGCGGCTTTAAACACATTGATATCGTTATCGAAGCGGTGTTTGAAGATCTTGCTTTAAAGCAAGGTATGGTGGCCGATGTAGAACGCGAATGCCAAGACAACACGATTTTTGCAAGTAATACCTCATCATTACCAATTGCACAAATTGCTGCTGATGCAGCGCGTCCCGAAAATGTAATTGGTCTGCATTACTTCTCACCTGTTGAGAAAATGCCACTTGTTGAGATCATTCCACACGCTGGTACGTCTGAAGAAACTATCGCTCGCGTTGTTAACTTTGCCCGTAAGCAAGGTAAAACACCGATTGTGGTTAAAGACATGGCTGGTTTCTATGTAAACCGCATCTTAGCGCCTTATGTCAATGAAGCGGCTAATTTACTGCTTGCAGGTGAGCCAATTGAAAAGATTGACCAAGCATTGGTTGAGTTTGGTTTCCCTGTTGGGCCTTTAGCGTTACTTGATGAAGTCGGGATTGATATCGGTTCTAAAATTGCGCCAATCCTTGAAAAAGAATTGGGCGAGCGTTTTAAAGCCCCGGATGCCTTCAATCGCCTAATCGACTCTAAGCGTTTAGGTCGTAAGACTGGCCGTGGTTTTTATCTTTACGACAAGAAAGATAAAAAAGTGGATGAGTCAGTTTACGAGCTACTTGGTGTTACGCCATCACCTCGTTTAAACAAGAGCGAAATTGCTAAACGTTGTGTTGCGCAAATGCTTAACGAAGCGGTGCGCTGTTTAGATGATGGCATTATTTCAAGCCCGCGTGACGGTGATATTGGTGCTATTTTTGGTATCGGTTTCCCACCATTCTTAGGCGGCCCATTTAGCTATATGGATAAACTGGGTGCAGCACAAGTGAGCTCAGAAATGGCGACTTTTGCTAACTACAACCCAATTTTCACACCTTGCGATACGTTAAAAGCAATGGCTGAAAAGGGTGGTCGTTTTTACCAAGCAGAAAGCGAAGAGCCGGCTGTAACTGAAGCTAAGCCTGTCGATCCGGTTGAAGTAACCAAAGAAGTGGTTGAAGACGAGCAAGCGTCAGAAGAAGCTGATAAAGAAACGACTAAAAGCTAA

Transcript

ANN35331-RA

Protein

Uniprot

Uniprot term	Description
A1S7L6	Fatty acid oxidation complex subunit alpha OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) OX=326297 GN=fadJ PE=3 SV=1
Q87MM3	Fatty acid oxidation complex subunit alpha OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=fadJ PE=3 SV=1
A7MS61	Fatty acid oxidation complex subunit alpha OS=Vibrio campbellii (strain ATCC BAA-1116) OX=2902295 GN=fadJ PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00725	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF00378	ECH_1	Enoyl-CoA hydratase/isomerase	Domain	Interproscan
PF02737	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006180	Conserved_site	3-hydroxyacyl-CoA dehydrogenase, conserved site	Interproscan
IPR006108	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR012802	Family	Fatty oxidation complex, alpha subunit FadJ	Interproscan
IPR050136	Family	Fatty acid oxidation complex subunit alpha	Interproscan
IPR008927	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR001753	Family	Enoyl-CoA hydratase/isomerase	Interproscan
IPR018376	Conserved_site	Enoyl-CoA hydratase/isomerase, conserved site	Interproscan
IPR006176	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR029045	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43612	TRIFUNCTIONAL ENZYME SUBUNIT ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0003857	Molecular Function	3-hydroxyacyl-CoA dehydrogenase activity	Interproscan
GO:0004300	Molecular Function	enoyl-CoA hydratase activity	Interproscan
GO:0006635	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0008692	Molecular Function	3-hydroxybutyryl-CoA epimerase activity	Interproscan
GO:0051287	Molecular Function	NAD binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0070403	Molecular Function	NAD+ binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01782	fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase	EC:1.1.1.35 EC:4.2.1.17 EC:5.1.2.3	Caprolactam degradation	ko00930	deepkoala