Gene detail

Detailed information of ANN35335-RA in Montipora grisea

Genomic Location: Scaffold_9040__1_contigs__length_20825:15691...18175
NR annotation: MCA1370351.1, ATP-binding cassette domain-containing protein [Bradyrhizobium sp. BRP14]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN35335-RA

ATGCAGCGCCTGATCCAGGACGGATTGCTGGAGAACCGGCCGCACCGGGGCGTGTTCGTCCCGGCGCTGACCGACGAGGACCTCGCCGACATCTACTTCGCGCGCGAAGCGATCGAGACCGCCGCTCTCGGCCGGATCATGGCCGCGGGTGAAGCGGTTTCCGTTTCGCGACGGCTGACGATGGAGGTCGACCGCATGGTCGGCGCACCACACCGCGGCGACGGGAGCGCCATCGGCGACCACGAAATGCGCTTTCACATGCTGTTGGTGGACTCGGCGAACAGCCGGCGGCTCTCGCGGATTCCCGAACCCGGGTCCCGCCTCGCGGCCGGACGCCGCCTCGGGCGACACGCGGCCCGCGCTGGCGGCGGAACACCTGTGCGTGGGCCACCGGGAGCTCGGGACGTTCATCGAGGACGTGTCGCTCGAGATCGCCTACGGGGAGGTACTCGCCCTCGTCGGCGAGTCCGGTTGCGGCAAGAGCCTCACCGCGCTCGCGCTGATGCGGCTGCTGCCGCGGGGCTTTGCGGTGACGGGTGGCGCCATCCGGCTCGGTGCCGACGACATGCTGGCGAAGTCCGAGCGCGAGCTGAACGCGATCCGGGGCCGGCGCGTGGCCATGCTCTTCCAGCAGCCCCAGAGCATGCTCGACCCGACCTCGACCGCGGGGGCGCAGGTTGCCGAGCCGCTGAGGCTGCATCTCGGGATGAGCCGGCGAAGCGCGGGCCGGCGGGTCGTCGAGCTGCTCCGCGAGGTCGGTATCCCGGAGCCGGAGTATCGCGCGCGGAACTACGCCTTCCAGCTCTCCGGCGGCATGGCGCAGCGCGTGATGATCGCCGCGGCCCTCGGCGGGAATCCGGAAGTCCTGATCGCCGACGAGCCGACCACGGCGCTGGACGTCACGATTCAGCTCCAGATCCTGAAGCTGCTCGACTGCGAACGGCGCGGGCGCGGTCTCGCGGTCCTGCTGATCACGCACGACCTGAGCGTCGTCGCCGCGCTGGCCGATCGGGTCGCGGTCATGTACGCGGGCCGGATCGTGGAGCAGGGCGCGACGGCGCACATCCTCCGGCGGCCGAGGCACCCGTATACGCGGGTGCTGGTCGAGAGCTCGCTCCTTCGCGAACGGTCCGCCGGCACGCCGGACTCGTGGCGGGAGTCCGCGCAGGACGCCCTGCATGCGACACGCGGCTGCCGCTACTACGCGCGGTGCCCGGCAACGACTCGAGAGTCGGTGCAGGCCCGGTGCCGGAGCCGGGAGCCCGCGCTCGAAGCGCACCCCGGCGGCCACGCCGTGCGGTGCTGGGCGGTCACCTCCGTCGACGAGCGAACGCCGTGACGAGCACGCGGCATCAGGCGCCGGGCGACGGCGCAGGGGCGCCGCCGGATTTCGTGATCGTCGACGGGGTCGTCAAGCACTTCCCGGTACGGGTGGGGGCGTGGCGAAGAGGAAGCGTGCGCTCGCTCGACGGGGTCAGCTTCGCGATTCGCCGGGGCGAGGTCATGGGCTTGGTCGGGGAATCCGGCTGCGGGAAGAGCACGCTCGCCCGGGTCCTGCTTCGACTGCTTCGGCCTGACAGCGGTTCCGTCACCATTGCGGGCCGGGACCTCGCGTCGCTGCGCGGGGAGGCGCTCCGCCGGTTCCGCACCTCGATGCAGCTCATCTTCCAGAATCCGTACGCGGCGCTCGATCCCCGCATGCGGATCGGGACGAGCCTCGCGGCGCCGCTCGCGCAGCATGGCATCGGAACGCACCGGGGGCGGCTCCGGCGCGTGGCCGACATGCTGAGGGAGGTCGGACTCGACGATTCCTTCGTCGAGCGCCTGCCGCGACAGTGCTCGGGCGGCGAGCTCCAGCGCATCGTCATCGCGCGGGCGCTGCTGCTCGAGCCCCGGTTCCTGGTGTGCGACGAGCCGACGTCGGCCCTCGATGCGTCGTTGCGCGCACAGGTCGTCGACCTGCTCGTCGATCTCAAGCGGCGTTTCGACCTCACGCTGCTGCTGATCTCGCACGACCTGCGGGTGGTGCGCCATGTGAGTGATCGGGTCGCCGTCATGTATCTCGGCCGGATCGTGGAGATCGGAGAGCGCGACGCGGTGTTCAACGAGCCCCTGCATCCCTACACGCGGGTGCTGATCGCGGCGTCGCTGCTGGAGGAGAACGGTCTCGCCGCCGGCGACGACGTTCGGGGCGAGCCGCCGAGTCCGCTGGACCCGCCCCGCGGCTGCAGCTTCCACCCG

Transcript

ANN35335-RA

Protein

Uniprot

Uniprot term	Description
Q53194	Probable peptide ABC transporter ATP-binding protein y4tS OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=NGR_a01400 PE=3 SV=1
P42065	Oligopeptide transport ATP-binding protein AppF OS=Bacillus subtilis (strain 168) OX=224308 GN=appF PE=3 SV=2
A0A0H2ZH52	Di/tripeptide transport ATP-binding protein DppF OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=dppF PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08352	oligo_HPY	Oligopeptide/dipeptide transporter, C-terminal region	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF07729	FCD	FCD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013563	Domain	Oligopeptide/dipeptide ABC transporter, C-terminal	Interproscan
IPR008920	Homologous_superfamily	Transcription regulator FadR/GntR, C-terminal	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR050319	Family	ABC Transporter ATP-Binding	Interproscan
IPR011711	Domain	GntR, C-terminal	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43776	TRANSPORT ATP-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0015833	Biological Process	peptide transport	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan