Gene detail

Detailed information of ANN35336-RA in Leptoseris scabra

Genomic Location: Scaffold_1322__1_contigs__length_28220:8415...10529
NR annotation: MCG8668424.1, ATP-binding protein [Pseudomonadales bacterium]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35336-RA

ATGACGAAATTAGTGAGTTTCATACTACGTGACAGTATCAATCGTGTGGGGTTTTCAGGAAAATACCACACCCGATTATTACTCGAAGAAATCAGCGAGCAGCTACCCGACCTCGTCTATATCCGTGTGGTGGACACCCATTTTGTCACCATTGCCCATAGTGACAGCACCTTAAATAATCAAAAACTGAATCGCTCAGAGCAAAAATATCTCGCCCCATTACTTTATGAACAAGAGGAATTTTTAGTCCGCGATGTCGTCCTAGCCAATGGTGAAGCCGTCAAAGAAGTCTCCATGTCCTATCGTGCTGGCTATACGCGTGAGCTGGCTGGACTCATCATTGTGGGTGTTTCGACGACAGCAATCAGCCAGGCCATGAACTATGGTCTGAATCTGATGGGTGCCGTCATCGTGTTATTAATCACCATATCCTGCGTCGCCATCATCTCCCTCAGCCGCCTATTTAGTCGAGCTGTGGAAAAAACAGAATTTGAACGAGCCTTAGCAGACCAAAGAGCCCAAGGTGCCTTAGAAGAAAGCCGCGCAAAGAGTGAATTCCTGGCTGTGATGAGCCATGAAATTCGAACCCCCATGAATGGGGTTTTAGGAATGGGGCAACTCTTGAAGGAAACCCATTTAACCCCCGAGCAACAGCGTTATGTCGAAACGATCAATCAATCAGGACAGGCTTTATTGACCATCATTAATGATGTCTTAGATTTCTCGAAAATCAGTGCCGGTAAACTGGATATTGAGCAAATCGATATTTCTCTCGCCGACCTTATCGACAATTGTGTAGAAATCTTTGCCCTAAAAACCCTCGACTGCAATCTGCAATTCTTAGTCAACATAGACCCTAAACTGCCAGCGTATTTCAAAGGAGACCCTGTCAGGCTTCGACAAATCATCACCAATTTATTAGGTAATGCCTTTAAGTTCACCAAAAATGGCTCGATAGAATTATCCGTTCACCTCAATGCCGTGAGCCCCCAAGAGCAATGGCTATCCATTTCTGTGTCAGATACAGGTATCGGTATTGACGAACAACAACGGGGAAAACTTTTCTCGGCGTTCATGCAAGCCGATAGCTCCACCACACGTAAATTTGGCGGTACGGGTTTAGGATTAGCCATTTGTAAAAACCTCGTCACCTTAATGGGCGGCGATATTGGTGTAGAGAGCGAAATTAACGAAGGCTCTACTTTTTGGTTCAAGATCCCTCTTATAAAAGCCCCGCCCTTTCAACTGGTTTTCAATAAACACTTTAATGGCCAACATTTATTATTGGTGGATAGCAACAAGAAATTCACCTCTAGCTTAACCCCCATACTCAGGGCGTGGGGCTTATTTGTACACTGCTATAGCTGTGTTAAAGCCCTCACCACGGCCTTAGAAGAAGATGCGATTCATTGTCACACATTGCAACTGGCCATGATTAACCTCAACTTGGATGACGGTTTAGGCGTAGATTTAGCCTTGTTTTTGCGCCAACGACCTGGTGGCAAAGAGTTACCGATTCTATTGCTATCCGAGAGCCGACATCTCCCTGATAGTCCCATGGGGCTCACCATAGAAATGAGTAAACTTGGCCCTGTGCTAGAAAAACCTATTCCTATTCGTTATGTCTTACAACAACTGTCCAAAGTTCTCTCGGCTACCTCAGAAAACGCCAACGCTTCCCTGACTCAGGAGAGACCCAACTATGAATTACTCCGAGTCCTCATTGCCGAGGATAATCATGTCAATCGCATGGTCATCAAAGGTATGTTGAAAAAATTCAGCATAGTGCCCACCTTTGCCCATGACGGCCAAGAAGCCGTGGATGCTGTCACTAACGCCGAACAGCCTTTTCATCTCATACTGATGGACTGTGAAATGCCCGTCATGGATGGTTATGCCGCTACGGAAAACATTCGTGAGCTAGAACAACAAAGGGGCGAGCGTTATCTCATTATTGGCCTCAGTGCTCATGCAGTGAATGAACTCAAACAAAAAGCCCTGGCCTCGGGTATGGATGATTATCTGACCAAACCCGTGAGCTTTGATATGCTGAATAAACTCTTATCCGACTATTTTCCTAACGGCGCTTCCATGACTCAAAGACGCAGTGCTTAA

Transcript

ANN35336-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P59342	Signal transduction histidine-protein kinase BarA OS=Shigella flexneri OX=623 GN=barA PE=3 SV=1
P0AEC7	Signal transduction histidine-protein kinase BarA OS=Escherichia coli O157:H7 OX=83334 GN=barA PE=3 SV=1
P0AEC6	Signal transduction histidine-protein kinase BarA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=barA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006816 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00512 all species →	HisKA	His Kinase A (phospho-acceptor) domain	Domain	Interproscan
PF00072 all species →	Response_reg	Response regulator receiver domain	Domain	Interproscan
PF02518 all species →	HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005467 all species →	Domain	Histidine kinase domain	Interproscan
IPR001789 all species →	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR003661 all species →	Domain	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	Interproscan
IPR004358 all species →	Domain	Signal transduction histidine kinase-related protein, C-terminal	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR011006 all species →	Homologous_superfamily	CheY-like superfamily	Interproscan
IPR036097 all species →	Homologous_superfamily	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45339 all species →	HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0000155 all species →	Molecular Function	phosphorelay sensor kinase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35336-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.