Detailed information of ANN35339-RA in Leptoseris scabra

Genomic Location: Scaffold_98__1_contigs__length_60245:18483...21692
NR annotation: WP_274687007.1, valine--tRNA ligase [Spartinivicinus sp. A2-2]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q0VSA8Valine--tRNA ligase OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) OX=393595 GN=valS PE=3 SV=1
Q3JC50Valine--tRNA ligase OS=Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 11848 / C-107) OX=323261 GN=valS PE=3 SV=1
Q606C1Valine--tRNA ligase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=valS PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00133tRNA-synt_1tRNA synthetases class I (I, L, M and V)DomainInterproscan
PF00313CSD'Cold-shock' DNA-binding domainDomainInterproscan
PF08264Anticodon_1Anticodon-binding domain of tRNA ligaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009080Homologous_superfamilyAminoacyl-tRNA synthetase, class Ia, anticodon-bindingInterproscan
IPR019844DomainCold-shock (CSD) domainInterproscan
IPR014729Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR002059DomainCold-shock protein, DNA-bindingInterproscan
IPR002303FamilyValine-tRNA ligaseInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR002300DomainAminoacyl-tRNA synthetase, class IaInterproscan
IPR033705DomainValyl tRNA synthetase, anticodon-binding domainInterproscan
IPR001412Conserved_siteAminoacyl-tRNA synthetase, class I, conserved siteInterproscan
IPR009008Homologous_superfamilyValyl/Leucyl/Isoleucyl-tRNA synthetase, editing domainInterproscan
IPR013155DomainMethionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-bindingInterproscan
IPR011129DomainCold shock domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11946VALYL-TRNA SYNTHETASESInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0004812Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006418Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004832Molecular Functionvaline-tRNA ligase activityInterproscan
GO:0006438Biological Processvalyl-tRNA aminoacylationInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0002161Molecular Functionaminoacyl-tRNA editing activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01873VARS, valS; valyl-tRNA synthetaseEC:6.1.1.9
Transfer RNA biogenesisko03016deepkoala

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