Detailed information of ANN35340-RA in Leptoseris scabra

Genomic Location: Scaffold_98__1_contigs__length_60245:54395...54979
NR annotation: WP_018276454.1, superoxide dismutase [Fe] [Teredinibacter turnerae]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P84612Superoxide dismutase [Fe] OS=Pseudoalteromonas translucida (strain TAC 125) OX=326442 GN=sodB PE=1 SV=1
P0AGD5Superoxide dismutase [Fe] OS=Escherichia coli O157:H7 OX=83334 GN=sodB PE=3 SV=2
P0AGD4Superoxide dismutase [Fe] OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=sodB PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001942 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00081
all species →		Sod_Fe_NIron/manganese superoxide dismutases, alpha-hairpin domainDomainInterproscan
PF02777
all species →		Sod_Fe_CIron/manganese superoxide dismutases, C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036314
all species →		Homologous_superfamilyManganese/iron superoxide dismutase, C-terminal domain superfamilyInterproscan
IPR001189
all species →		FamilyManganese/iron superoxide dismutaseInterproscan
IPR019831
all species →		DomainManganese/iron superoxide dismutase, N-terminalInterproscan
IPR036324
all species →		Homologous_superfamilyManganese/iron superoxide dismutase, N-terminal domain superfamilyInterproscan
IPR019832
all species →		DomainManganese/iron superoxide dismutase, C-terminalInterproscan
IPR019833
all species →		Binding_siteManganese/iron superoxide dismutase, binding siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42769
all species →		SUPEROXIDE DISMUTASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004784
all species →		Molecular Functionsuperoxide dismutase activityInterproscan
GO:0006801
all species →		Biological Processsuperoxide metabolic processInterproscan
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04564SOD2; superoxide dismutase, Fe-Mn familyEC:1.15.1.1
Lipid and atherosclerosisko05417deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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