Detailed information of ANN35352-RA in Leptoseris scabra

Genomic Location: Scaffold_1917__1_contigs__length_23904:16137...17441
NR annotation: WP_166340717.1, MULTISPECIES: serine--tRNA ligase [Pseudoalteromonas]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3IH21Serine--tRNA ligase OS=Pseudoalteromonas translucida (strain TAC 125) OX=326442 GN=serS PE=3 SV=1
Q5R0B0Serine--tRNA ligase OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 GN=serS PE=3 SV=1
Q6LT00Serine--tRNA ligase OS=Photobacterium profundum (strain SS9) OX=298386 GN=serS PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003390 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02403
all species →		Seryl_tRNA_NSeryl-tRNA synthetase N-terminal domainDomainInterproscan
PF00587
all species →		tRNA-synt_2btRNA synthetase class II core domain (G, H, P, S and T)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR015866
all species →		DomainSerine-tRNA synthetase, type1, N-terminalInterproscan
IPR002317
all species →		FamilySerine-tRNA ligase, type1Interproscan
IPR002314
all species →		DomainAminoacyl-tRNA synthetase, class II (G/ P/ S/T)Interproscan
IPR042103
all species →		Homologous_superfamilySerine-tRNA synthetase, type1, N-terminal domain superfamilyInterproscan
IPR033729
all species →		DomainSerine-tRNA ligase catalytic core domainInterproscan
IPR006195
all species →		DomainAminoacyl-tRNA synthetase, class IIInterproscan
IPR010978
all species →		Homologous_superfamilyClass I and II aminoacyl-tRNA synthetase, tRNA-binding armInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43697
all species →		SERYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0004828
all species →		Molecular Functionserine-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006434
all species →		Biological Processseryl-tRNA aminoacylationInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0006418
all species →		Biological ProcesstRNA aminoacylation for protein translationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01875SARS, serS; seryl-tRNA synthetaseEC:6.1.1.11
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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