Genomic Location: Scaffold_841__1_contigs__length_70772:4382...6558
NR annotation: WP_089371197.1, adenylosuccinate lyase [Dokdonia pacifica]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN35369-RA |
| Transcript |
| ANN35369-RA |
| Protein |
| ANN35369-RA |
| UniProt accession | Description |
|---|---|
| Q54J34 | Adenylosuccinate lyase OS=Dictyostelium discoideum OX=44689 GN=purB PE=3 SV=1 |
| Q9I0K9 | Adenylosuccinate lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=purB PE=1 SV=1 |
| A0A0H3AL67 | Adenylosuccinate lyase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) OX=345073 GN=purB PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0015851 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08328 all species → | ASL_C | Adenylosuccinate lyase C-terminal | Family | Interproscan |
| PF03938 all species → | OmpH | Outer membrane protein (OmpH-like) | Domain | Interproscan |
| PF00206 all species → | Lyase_1 | Lyase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000362 all species → | Family | Fumarate lyase family | Interproscan |
| IPR004769 all species → | Family | Adenylosuccinate lyase | Interproscan |
| IPR047136 all species → | Family | Adenylosuccinate lyase PurB, bacteria | Interproscan |
| IPR024930 all species → | Homologous_superfamily | Skp domain superfamily | Interproscan |
| IPR005632 all species → | Family | Chaperone protein Skp | Interproscan |
| IPR013539 all species → | Domain | Adenylosuccinate lyase PurB, C-terminal | Interproscan |
| IPR024083 all species → | Homologous_superfamily | Fumarase/histidase, N-terminal | Interproscan |
| IPR022761 all species → | Domain | Fumarate lyase, N-terminal | Interproscan |
| IPR020557 all species → | Conserved_site | Fumarate lyase, conserved site | Interproscan |
| IPR008948 all species → | Homologous_superfamily | L-Aspartase-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43411 all species → | ADENYLOSUCCINATE LYASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004018 all species → | Molecular Function | N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity | Interproscan |
| GO:0009152 all species → | Biological Process | purine ribonucleotide biosynthetic process | Interproscan |
| GO:0051082 all species → | Molecular Function | unfolded protein binding | Interproscan |
| GO:0006188 all species → | Biological Process | IMP biosynthetic process | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01756 | purB, ADSL; adenylosuccinate lyase | EC:4.3.2.2 | Alanine, aspartate and glutamate metabolism | ko00250 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
