Gene detail

Detailed information of ANN35376-RA in Leptoseris scabra

Genomic Location: Scaffold_2270__1_contigs__length_20108:11506...13314
NR annotation: WP_166989527.1, N-acetylmuramoyl-L-alanine amidase [Pseudomaricurvus alkylphenolicus]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3PDC3	DNA mismatch repair protein MutL OS=Cellvibrio japonicus (strain Ueda107) OX=498211 GN=mutL PE=3 SV=1
P63884	N-acetylmuramoyl-L-alanine amidase AmiC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=amiC PE=3 SV=1
P63883	N-acetylmuramoyl-L-alanine amidase AmiC OS=Escherichia coli (strain K12) OX=83333 GN=amiC PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0032593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01520 all species →	Amidase_3	N-acetylmuramoyl-L-alanine amidase	Domain	Interproscan
PF11741 all species →	AMIN	AMIN domain	Family	Interproscan
PF13589 all species →	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002508 all species →	Domain	N-acetylmuramoyl-L-alanine amidase, catalytic domain	Interproscan
IPR021731 all species →	Domain	AMIN domain	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR002099 all species →	Family	DNA mismatch repair protein MutL/Mlh/PMS	Interproscan
IPR014762 all species →	Conserved_site	DNA mismatch repair, conserved site	Interproscan
IPR050695 all species →	Family	N-acetylmuramoyl-L-alanine amidase 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30404 all species →	N-ACETYLMURAMOYL-L-ALANINE AMIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008745 all species →	Molecular Function	N-acetylmuramoyl-L-alanine amidase activity	Interproscan
GO:0009253 all species →	Biological Process	peptidoglycan catabolic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan
GO:0000910 all species →	Biological Process	cytokinesis	Interproscan
GO:0030288 all species →	Cellular Component	outer membrane-bounded periplasmic space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01448	amiABC; N-acetylmuramoyl-L-alanine amidase	EC:3.5.1.28	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.