Gene detail

Detailed information of ANN35377-RA in Leptoseris scabra

Genomic Location: Scaffold_2270__1_contigs__length_20108:17386...17898
NR annotation: WP_216095523.1, oligoribonuclease [Aestuariicella albida]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q4KJ81	Oligoribonuclease OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=orn PE=3 SV=1
A4VR15	Oligoribonuclease OS=Stutzerimonas stutzeri (strain A1501) OX=379731 GN=orn PE=3 SV=1
A6VD64	Oligoribonuclease OS=Pseudomonas paraeruginosa (strain DSM 24068 / PA7) OX=381754 GN=orn PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00929	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013520	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR022894	Family	Oligoribonuclease	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11046	OLIGORIBONUCLEASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000175	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13288	orn, REX2, REXO2; oligoribonuclease	EC:3.1.-.-	Ribosome biogenesis	ko03009	deepkoala