Genomic Location: Scaffold_700__1_contigs__length_34039:24975...27014
NR annotation: WP_269675167.1, NAD-dependent DNA ligase LigA [Endozoicomonas sp. GU-1]
Species abbreviation LSCAB · all data for this species · gene families
| CDS |
| ANN35389-RA |
| Transcript |
| ANN35389-RA |
| Protein |
| ANN35389-RA |
| UniProt accession | Description |
|---|---|
| B8GTL0 | DNA ligase OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=ligA PE=3 SV=1 |
| B4EZR2 | DNA ligase OS=Proteus mirabilis (strain HI4320) OX=529507 GN=ligA PE=3 SV=1 |
| Q21JI8 | DNA ligase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=ligA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0011504 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12826 all species → | HHH_2 | Helix-hairpin-helix motif | Motif | Interproscan |
| PF14520 all species → | HHH_5 | Helix-hairpin-helix domain | Domain | Interproscan |
| PF00533 all species → | BRCT | BRCA1 C Terminus (BRCT) domain | Family | Interproscan |
| PF03119 all species → | DNA_ligase_ZBD | NAD-dependent DNA ligase C4 zinc finger domain | Domain | Interproscan |
| PF01653 all species → | DNA_ligase_aden | NAD-dependent DNA ligase adenylation domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR041663 all species → | Domain | DisA/LigA, helix-hairpin-helix motif | Interproscan |
| IPR036420 all species → | Homologous_superfamily | BRCT domain superfamily | Interproscan |
| IPR001357 all species → | Domain | BRCT domain | Interproscan |
| IPR013840 all species → | Domain | NAD-dependent DNA ligase, N-terminal | Interproscan |
| IPR001679 all species → | Family | NAD-dependent DNA ligase | Interproscan |
| IPR004149 all species → | Domain | Zinc-finger, NAD-dependent DNA ligase C4-type | Interproscan |
| IPR013839 all species → | Domain | NAD-dependent DNA ligase, adenylation | Interproscan |
| IPR010994 all species → | Homologous_superfamily | RuvA domain 2-like | Interproscan |
| IPR003583 all species → | Domain | Helix-hairpin-helix DNA-binding motif, class 1 | Interproscan |
| IPR018239 all species → | Active_site | NAD-dependent DNA ligase, active site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23389 all species → | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003911 all species → | Molecular Function | DNA ligase (NAD+) activity | Interproscan |
| GO:0006260 all species → | Biological Process | DNA replication | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006288 all species → | Biological Process | base-excision repair, DNA ligation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01972 | E6.5.1.2, ligA, ligB; DNA ligase (NAD+) | EC:6.5.1.2 | DNA repair and recombination proteins | ko03400 | deepkoala |
