Gene detail

Detailed information of ANN35389-RA in Montipora grisea

Genomic Location: Scaffold_3821__1_contigs__length_34444:23117...25411
NR annotation: EEE37052.1, D-lactate dehydrogenase (cytochrome) [Rhodobacteraceae bacterium KLH11]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35389-RA

ATGACCCGCGATCAGCTGGTTGCGGCAGTGAAAGAGGCCGATGTGCTGGTGCCGACCATCACCGACACGATCGACGGCGGTATTCTGGGTCAGGCGGGCGACAAGCTGCGCCTGATAGCAAACTATGGCGCCGGGGTCGACAATATCGACGTGGCAACTGCACGCCAGAGGGGCATTCTGGTGTCGAACACACCCGGTGTGCTGACCGACGACACGGCGGACATGACCATGGCGTTGATCCTGGCCGTGACGCGCCGTATCCCCGAGGGGTTGGGCGTGATGCAAAAGGGCGACTGGGAAGGCTGGGCGCCCACGGCTCTGCTGGGTGGTCGGGTCGGCGGGCGACGTCTGGGCATTCTGGGTATGGGCCGGATCGGACAGGCCGTGGCCCGGCGCGCCAGCGCCTTCGGAATGCAGGTGCACTACCATAACCGTCGCCGCCTGCGACCCGACGTCGAGCAGGAACTGGAAGCGACCTATTGGGAAAGTCTGGACCAGATGGTGGCGCGGATGGACGTGATTTCGATCAATTGTCCCTCGACGCCGTCGACCTTCCATTTGATGAATGCGCGGCGATTGAAGCTGATGAAACCCTCGGCGGTGATCGTGAACACCTCGCGCGGAGAGGTGGTGGACGAGAATGCGCTGACCCGGATGATCCGCTCGGGCGAGATCGCAGGGGCGGGACTGGATGTTTATGAACACGGTACTGATGTGAACCCGCGTCTGCGGAAACTGCCCAACGTGGTGCTGCTGCCGCATATGGGCTCGGCGACGTTGGAAGGACGGGTCGAGATGGGCGAGAAGGTGATTATCAACATCAAGACGTTTGAAGATGGTCATCGCCCACCGGATCAGGCGCAAAGGGGGATCACGATCGTGCAGGCATCCACTCTGCCACGAAATGAGGCCGGGATCGAAACGGTGATCGGAGTGTTGAAGCAACGCTTTGGAGATCGGCTGCAAACTGGTGCGGCGATCCGCGAACAGCACGGCCATACGACCACATGGATCGAGAATCAAAGCCCGGACGCGGTGGTGTTCCCGCAATCTACTGAAGAGGTAGCCGAGATTGTGCGCGCTTGTGCTGCGCACAAGGTGCCGGTGATCCCGTTTGGCACCGGAACCTCGCTCGAAGGGCATGTGAACGCGCCTGCAGGTGGGTTGTCGGTTGATCTGACCCGGATGGACAAGATTCTGGCGGTCAATACGGGGGATCTGGATTGCACCGTGCAGCCCGGCGTGATCCGCGCCGATCTGAACACGCATCTGCGCGATCAGGGTCTGTTCTTTCCGATTGATCCGGGGGCCAATGCCTCGCTGGGTGGTATGGCGGCGACCCGCGCCTCGGGCACCAATGCGGTGCGGTACGGGACGATGAAGGACAATGTGCTGAGCCTGGAGGCGGTCATGCCCGACGGGCAGATCATCCGCACTGGTCACAGAGCACGCAAATCTTCGGCCGGATACGACCTGACCCGCCTGTTGATCGGGGCCGAGGGGACGCTGGGGATCATCACCGAGATCACGCTGCGCCTGCAAGGCATCCCCGAGGCGATCAGCTCGGCCCGCTGTTCCTTTCCAACTGTGGATGCGGCCTGTCAGGCGGTGATGATGACCATCCAATACGGTATTCCAGTGGCCCGGATCGAGCTGCTGGATCAGATGTCGGTGCGCGCCGCCAATGCCTATTCGGGGCTTGATCTGCCAGAAACGCCGCTGTTGCTGCTCGAGTTTCACGGATCTGAAAGCGGTGCCACGGAACAGGCCGAAACCTTCGGGCAGATTGCCGAGGAATTCGGCGGCACGGATTTCGCCGCGACCTCGACCACGGAAGAGCGTTCCAAGCTCTGGCAGGCGCGGCACGATATGTATTGGGCCTGCCTGCAATTGCGTCCCGGCGCCAGTGGCATTTCGACCGATGTCTGCGTGCCGATCTCTCGTCTGGCCGAATGCGTGACCGCTGCCCAGGACAAGGCGCAGGAACTGGGGTTGCTTGCCCCGATCGTCGGCCATGTCGGCGATGGAAATTTTCACACTCTGCTACTGATCGATATGGAGAACGCGAAAGAAGTTTCAGCGGCGGAAGATTTCGTTGGGTGGTTGAACGATCTGGCGATCTCGATGGACGGCACCTGCACCGGAGAGCACGGGATCGGGCAGGGTAAACGCCCCTATCTGGTCAAAGAACTTGGTATTGCGACAGACTACATGTCTGCGATCAAAGCGGCGCTGGACCCCGATAACATCATGAATCCGGGCAAAATGCTCTGA

Transcript

ANN35389-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1QXM5	Probable D-lactate dehydrogenase, mitochondrial OS=Danio rerio OX=7955 GN=ldhd PE=2 SV=1
Q7TNG8	Probable D-lactate dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Ldhd PE=1 SV=1
Q86WU2	Probable D-lactate dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=LDHD PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004714 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00389 all species →	2-Hacid_dh	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	Domain	Interproscan
PF02913 all species →	FAD-oxidase_C	FAD linked oxidases, C-terminal domain	Domain	Interproscan
PF01565 all species →	FAD_binding_4	FAD binding domain	Domain	Interproscan
PF02826 all species →	2-Hacid_dh_C	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016166 all species →	Domain	FAD-binding domain, PCMH-type	Interproscan
IPR016164 all species →	Homologous_superfamily	FAD-linked oxidase-like, C-terminal	Interproscan
IPR006139 all species →	Domain	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	Interproscan
IPR016171 all species →	Homologous_superfamily	Vanillyl-alcohol oxidase, C-terminal subdomain 2	Interproscan
IPR036318 all species →	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR029752 all species →	Conserved_site	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1	Interproscan
IPR029753 all species →	Conserved_site	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site	Interproscan
IPR004113 all species →	Domain	FAD-binding oxidoreductase/transferase, type 4, C-terminal	Interproscan
IPR016169 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan
IPR006094 all species →	Domain	FAD linked oxidase, N-terminal	Interproscan
IPR006140 all species →	Domain	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11748 all species →	D-LACTATE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0004458 all species →	Molecular Function	D-lactate dehydrogenase (cytochrome) activity	Interproscan
GO:0008720 all species →	Molecular Function	D-lactate dehydrogenase activity	Interproscan
GO:1903457 all species →	Biological Process	lactate catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35389-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.