Gene detail

Detailed information of ANN35391-RA in Leptoseris scabra

Genomic Location: Scaffold_1826__1_contigs__length_24561:14511...15682
NR annotation: CAI4016394.1, unnamed protein product [Cladocopium goreaui]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49398	Small ribosomal subunit protein eS4 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS4 PE=2 SV=3
O22424	Small ribosomal subunit protein eS4 OS=Zea mays OX=4577 GN=RPS4 PE=2 SV=1
P46300	Small ribosomal subunit protein eS4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006501 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16121 all species →	40S_S4_C	40S ribosomal protein S4 C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000876 all species →	Family	Small ribosomal subunit protein eS4	Interproscan
IPR032277 all species →	Domain	Small ribosomal subunit protein eS4, C-terminal domain	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11581 all species →	30S/40S RIBOSOMAL PROTEIN S4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18146	adeB; multidrug efflux pump	-	Antimicrobial resistance genes	ko01504	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.