Gene detail

Detailed information of ANN35397-RA in Leptoseris scabra

Genomic Location: Scaffold_2267__1_contigs__length_20181:14120...16240
NR annotation: WP_054552388.1, MULTISPECIES: nitrogen regulation protein NR(I) [Pseudoalteromonas]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0AFB9	DNA-binding transcriptional regulator NtrC OS=Escherichia coli O157:H7 OX=83334 GN=glnG PE=3 SV=1
P0AFB8	DNA-binding transcriptional regulator NtrC OS=Escherichia coli (strain K12) OX=83333 GN=glnG PE=1 SV=1
P41789	DNA-binding transcriptional regulator NtrC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=glnG PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0023525 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00512 all species →	HisKA	His Kinase A (phospho-acceptor) domain	Domain	Interproscan
PF00158 all species →	Sigma54_activat	Sigma-54 interaction domain	Domain	Interproscan
PF00072 all species →	Response_reg	Response regulator receiver domain	Domain	Interproscan
PF02954 all species →	HTH_8	Bacterial regulatory protein, Fis family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003661 all species →	Domain	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	Interproscan
IPR010114 all species →	Family	DNA-binding transcriptional regulator NtrC	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR002078 all species →	Domain	RNA polymerase sigma factor 54 interaction domain	Interproscan
IPR002197 all species →	Domain	DNA binding HTH domain, Fis-type	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR025943 all species →	Binding_site	Sigma-54 interaction domain, ATP-binding site 2	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR005467 all species →	Domain	Histidine kinase domain	Interproscan
IPR036097 all species →	Homologous_superfamily	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	Interproscan
IPR001789 all species →	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR025944 all species →	Conserved_site	Sigma-54 interaction domain, conserved site	Interproscan
IPR011006 all species →	Homologous_superfamily	CheY-like superfamily	Interproscan
IPR025662 all species →	Binding_site	Sigma-54 interaction domain, ATP-binding site 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32071 all species →	TRANSCRIPTIONAL REGULATORY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000155 all species →	Molecular Function	phosphorelay sensor kinase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0000156 all species →	Molecular Function	phosphorelay response regulator activity	Interproscan
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006808 all species →	Biological Process	regulation of nitrogen utilization	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35397-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.