Gene detail

Detailed information of ANN35399-RA in Leptoseris scabra

Genomic Location: Scaffold_1103__1_contigs__length_30018:6751...7056
NR annotation: WP_188860671.1, 50S ribosomal protein L20 [Marinobacterium nitratireducens]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4KEW1	Large ribosomal subunit protein bL20 OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=rplT PE=3 SV=1
Q9X6E8	Large ribosomal subunit protein bL20 OS=Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CFBP 6595 / CHA0) OX=1124983 GN=rplT PE=3 SV=1
Q1IC12	Large ribosomal subunit protein bL20 OS=Pseudomonas entomophila (strain L48) OX=384676 GN=rplT PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005439 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00453 all species →	Ribosomal_L20	Ribosomal protein L20	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005813 all species →	Family	Large ribosomal subunit protein bL20	Interproscan
IPR049946 all species →	Conserved_site	Large ribosomal subunit protein bL20, conserved site	Interproscan
IPR035566 all species →	Homologous_superfamily	Ribosomal protein bL20, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10986 all species →	39S RIBOSOMAL PROTEIN L20	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02887	RP-L20, MRPL20, rplT; large subunit ribosomal protein L20	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.