Gene detail

Detailed information of ANN35415-RA in Leptoseris scabra

Genomic Location: Scaffold_1565__1_contigs__length_26353:8225...9613
NR annotation: WP_101747261.1, V-type ATP synthase subunit B [Endozoicomonas acroporae]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B2S1S7	V-type ATP synthase beta chain OS=Borrelia hermsii (strain HS1 / DAH) OX=314723 GN=atpB PE=3 SV=1
A1QYP2	V-type ATP synthase beta chain OS=Borrelia turicatae (strain 91E135) OX=314724 GN=atpB PE=3 SV=1
Q0SP71	V-type ATP synthase beta chain OS=Borreliella afzelii (strain PKo) OX=390236 GN=atpB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006231 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00006 all species →	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	Domain	Interproscan
PF02874 all species →	ATP-synt_ab_N	ATP synthase alpha/beta family, beta-barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022879 all species →	Family	V-type ATP synthase regulatory subunit B/beta	Interproscan
IPR000194 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004100 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43389 all species →	V-TYPE PROTON ATPASE SUBUNIT B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046034 all species →	Biological Process	ATP metabolic process	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02118	ATPVB, ntpB, atpB; V/A-type H+/Na+-transporting ATPase subunit B	-	Oxidative phosphorylation	ko00190	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.