Gene detail

Detailed information of ANN35416-RA in Leptoseris scabra

Genomic Location: Scaffold_1565__1_contigs__length_26353:23072...24058
NR annotation: WP_066018285.1, tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA [Endozoicomonas atrinae]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4ZYY1	tRNA dimethylallyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=miaA PE=3 SV=1
Q4KJ74	tRNA dimethylallyltransferase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=miaA PE=3 SV=1
Q48P03	tRNA dimethylallyltransferase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=miaA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006450 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01715 all species →	IPPT	IPP transferase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018022 all species →	Family	IPP transferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039657 all species →	Family	Dimethylallyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11088 all species →	TRNA DIMETHYLALLYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan
GO:0052381 all species →	Molecular Function	tRNA dimethylallyltransferase activity	Interproscan
GO:0006400 all species →	Biological Process	tRNA modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00791	miaA, TRIT1; tRNA dimethylallyltransferase	EC:2.5.1.75	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.