Gene detail

Detailed information of ANN35428-RA in Leptoseris scabra

Genomic Location: Scaffold_1929__1_contigs__length_23769:6890...9667
NR annotation: VFT17146.1, methylcrotonyl-CoA carboxylase subunit beta [Pseudomonas aeruginosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN35428-RA

ATGTTTGAATACCAAAGTACACAGTTCTACACCCTAGATGAACCCATGCGCCTTTTGGAAGAGCAAGCGACGCGTTTTGCTCGCCAAGAAATTGCGCCTATTGCGGCATCAATCGATAGCAATAACAGTTTCCCGCTAGACCTATGGAATAAAATGGGTGAAATGGGGTTTCTAGGCATTACTGCGCCAGAAACCTATGGCGGCGCTCAACTTGGTTATAAAGCTCACGCCCTGGTCATGAAAATTATTAGTCGAGCCAGTGCCAGTGTCGGCTTAAGTTATGGTGCTCACTCAAATCTCTGTGTGAATCAACTCTGTCTTAACGGTAATGAAGCGCAAAAACAGCGCTATCTTCCCGATCTCATCAGTGGTAAATCCGTCGGCGCTCTAGCGATGAGTGAAGTCCAATCAGGTTCAGATGTCGTGAGCATGAGTCTCAGGGCGGACCCTGCACCTGGAGGCTATCGTTTAACGGGTAACAAGATGTGGATTACTAATGGGCCTGATGCCGATGTCTTAGTGGTTTACGCCAAAACAGAACCAGATGCTCACCAGCACGGTATCACCGCATTTATTGTTGAAAAAAGTTTTCCTGGATTTTCCCAAGGTGAAAAACTCGACAAATTAGGCATGCGTGGCTCAAACACTTGCGAACTGATCTTTGATGATTGCTTTATTCCTGAAGAAAATATTCTTGGCAATCTAAACGCTGGGGTTAAAGTGCTAATGAGTGGTCTCGATTATGAGCGACTCGTGCTAGCAGGAGGCCCGGTGGGTATCATGGAAGCCTGCCTTGATACCGTGTTGCCTTATATTCACAGTCGCGAACAGTTTCGCCAACCTATTGGTGAATTTCAACTGATTCAAGGTAAGGTGGCGGATATGTGGACCCACTATCAAGCGGCAAACACCTTACTCTTTCAAGTGGCAGAACAATACGATCAGGGATTGGGCGATAGAAAATCGGCAGCCTCTGTCATTCTTCTCTGTGCCGAAACAGCGACTCGGCTAGCGTTAGACTGTATTCAAATTCTCGGCGGTAATGGCTACACCAACGATTATCCAGCCGCACGTCTTCTTCGAGATGCCAAACTTTATGAGATTGGGGCAGAAACCTTTTTGGGCGGTGGCGAAAAAGCCATTGCTCGCCTGGCTAAGCAAGGAAAATGGACCGCTCGCCAGCGAATCGATGCCTTACTCGATCCCGCCTCTCCCTTTTTAGAGATTGGGCAATTTGCAGGTTGGGAGGTTTACCCTGAGAAAACGCCAGCCGCAGGCATTGTCATGGGCATTGGCTATGTGGCGAATCGTCTCGTTATGATTATCGCCAACGACGCGACGGTAAAAGGCGGCAGTTATTTCCCGATGACAGTTAAAAAACACTTACGGGGCCAAAAAATTGCCGAGGATTGTCGTTTACCCTGTATTTATTTAGTGGATTCCGCCGGTGCCAATCTGCAACGCCAAGCGGAAGTTTTCCCTGATCATGATCACTTTGGCCGAATCTTCTTTAACCAAGCGCGACTCTCTGCCGCAGGCATGACGCAAATTGCCGTCGTGATGGGAAGCTGTACCGCAGGTGGTGCCTACATTCCCGCAATGGCGGATCAAACTATTATTGTCGAAGAAACAGGAACTATTTACTTAGCAGGCCCTCCTTTAGTCAAGGCCGCCACTGGTGAAGTGGTAGATGCTCAAACCTTAGGGGGGGCAACATTACACACAGAGTCTTCTGGTGTGGCTGATTATCGAGCGAAAGATGATGCCGACGCCATTGACATTGCTCGTCGATGTGTCAGTCATTTAGAGGCAGAACAGCGTCCACCTTGGCCTCAGGACACGGTATCCTTAGCACCAGCTGTCGACTTTTCTGATATGGAACAATGGCTGCCAGATAACCCAAAACAAACCTATGATATCCGTGAAGTTCTCTATCGCTTTGTTGATCGCTCCGAGCTAGAAGAATTTAAACCCGCTTTTGGTCCTCGTCTCGTGTGTGCCTTCGCCACAATTATGGGACAACCTGTCGGCATTATTGCTAACCAATCTGTCTTGGATTCACAAACGGCGCTTAAAGCCGCCCATTTCATCCAACTTTGCTGCCAACGTAATACGCCTTTGTTATTTGTCCATAACGTTTCGGGATTTATGGTCGGCCAGCAGTACGAAGCCGAAGGTATTGCAAAACAAGGGGCCAAAATGGTGAATGCTGTCAGTTGCGCCACGGTACCGAAAATTTCCCTGATTGTTGGTGGTAGCTATGGCGCAGGAAACTATGCCATGTGCGGTCGTGCATACGATCCAGACTTTGTTTGGGCCTGGCCGACAGCTCGCACGGCGGTTATGGGTGGAGAACAAGCTGCTGACGTCGTCATGCAATTAGCCGCCAAAAAAAGCCAAAGTCCTAGCCCTGATGTGGAAGCCATTAAGGCAAGATTTGAAGAAGAAAGTCAGCCTTACTACTCCAGTGGCCGTCTCTGGGATGACGGCATCATTACCCCCGAAGAAACACGTTTAACGTTGGCCTTAAGCCTTTATGCAGCAAGGCATCCTAAACGACTGCAAGAGGCCAACACCCAATTCGCTGTCTTTCGTATGTAG

Transcript

ANN35428-RA

Protein

Uniprot

Uniprot term	Description
Q5XIT9	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mccc2 PE=2 SV=1
Q3ULD5	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Mus musculus OX=10090 GN=Mccc2 PE=1 SV=1
Q9HCC0	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens OX=9606 GN=MCCC2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02771	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan
PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF01039	Carboxyl_trans	Carboxyl transferase domain	Family	Interproscan
PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037069	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR009100	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR006089	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR046373	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR013786	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR011762	Domain	Acetyl-coenzyme A carboxyltransferase, N-terminal	Interproscan
IPR011763	Domain	Acetyl-coenzyme A carboxyltransferase, C-terminal	Interproscan
IPR009075	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR045190	Family	Methylcrotonoyl-CoA carboxylase beta chain MCCB/AccD1-like	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR029045	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR034733	Domain	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Interproscan
IPR006091	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22855	ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0003995	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0016874	Molecular Function	ligase activity	Interproscan
GO:0004485	Molecular Function	methylcrotonoyl-CoA carboxylase activity	Interproscan
GO:0006552	Biological Process	L-leucine catabolic process	Interproscan
GO:1905202	Cellular Component	methylcrotonoyl-CoA carboxylase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01969	MCCC2, accD1; 3-methylcrotonyl-CoA carboxylase beta subunit	EC:6.4.1.4	Valine, leucine and isoleucine degradation	ko00280	deepkoala