Gene detail

Detailed information of ANN35440-RA in Leptoseris scabra

Genomic Location: Scaffold_1728__1_contigs__length_25344:13246...16893
NR annotation: WP_020584702.1, type I secretion system permease/ATPase [Endozoicomonas elysicola]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35440-RA

ATGAATCAATTCAGTACTGTGCATGATGACTGGGACATTCCCGGGGAACAACTCGACAGCCGCGATGACCTACTTGAATGCCTTGCCCTGCTCACTCGGTATTACGGTAATCCATACTCCAGAGAATCACTTAAGTCCGGCATGCCCCTTGAGAATGGCCAATTCACGGCGGAGGTTTTCATCAGAGCTTCTGAACGAGTGGGTTTGGCCTGTAAAGCTCACAAGCGTTCAATATCGGAAATCTCCTCACTGGTCGTCCCTGCCGTTTTGCTACTCAATAAGCGCAAAGCTTGTATCTTGACCGATATTGACCACAGCGCTGGCACTGTGAAAATCATTTTTCCAGAAGCCGGTGATGGCACCAAAACCCTGTCTATTGACCAGCTTGCCGAGATATACAGCGGTTATGTGATCTACGTCCGGGAAAAACACCGCTACGACCGAAGAACCCCACAAAAATTGAATGTTAAATCCAGGCACTGGTTCTGGGGCACTATTTTTGGTTCCTGGCGCATTTACCGTGACGTGTTGCTAGCGTCTTTGCTGATCAATGTTTTCGTTGTTGCCAGCCCACTATTTGTTATGAATGTCTACGACCGGGTTGTTCCCAATCAGGCGTTTGACACCCTTTGGGTTCTGGCGGTGGGTGCTTTTATCGTTTTCAGTTTTGATTTTGTCTTGAAAATGGTACGCAGTTATTTTATCGACCTGGCCGGTAAAAAATCGGATATTTTGCTTTCATCCACCATTATGGAAAAAGTGCTCGGCCTGAGCATGAAGGCCAAGCCCGTGTCGGTGGGTTCCTTTGCCAAAAACCTGCAAGACTTCGAAAGCATCCGCGACTTCATTACCTCATCCACCGTTACCGCCTTGGTGGATCTGCCTTTTACCTGCATTATTCTTTTCGTGATTTTCATGCTTGGCGGCCCGGTAGCCATTATCCCGTTGGTAGCCATGTTGATTATCGGGCTGTACAGCTTCCTGATTCAGGAACCTCTAAAGCAGTCCGTTGATAAAACCCTCCGTTCCAGCCAGCAGAAAAATGCCACGCTGATCGAAAGCCTTTCTGGTATGGAAGCGCTGAAAATTTCTCAGGCTGAGAGCGATATCCAATACAAATGGGAGAAAGCCGTCAGCCACATTGCCACTTGGAGCATCAAAACAAAACTGCTTACCGCTTCGGCCACCAGCTTCAGCGCCTACGTCCAACAAGTGGCCAATATAGGCATGGTGATCCTTGGGGTCTACCTGATTGCCGAAGGTGAATTGAGTATGGGTGGACTGATTGCCTCGGTGATGCTCTCTGGCCGCTGTTTAGCGCCTATGGCCCAGATTGCTGGTCTGGCAACCCGCTACAACCAGTCAAAATCAGCACTGGATGGTTTAAACCAGGTGATGGATATGCCCTCTGAGCGCCACGAAGACCGGGACTACGTTAACCGTCCTGACCTGAAAGGCGCCATTGAGTTTGATGGAGTCAACTTTGCCTACCCCAACCAGGAAATTCAGGCTTTGCGAGAGGTTAGTCTGAAGATCAAGGCAGGGGAAAAGGTAGCGATTATCGGTCGTATTGGCTCAGGCAAGACCACCATTGAAAAACTGATCCTCGGTCTTTATGAGCCAGATGATGGCGCAGTGCGCATTGATGGCATCGACTTGCGTCAGATTAATCCCACCGACCTGCGCTCCAGCATCGGTTGCGTCAGCCAGGACATTACGCTGTTTTACGGCTCCATCCGCGACAACATTACCCTCGGTGCCAGCCATGTAGACGATGATCAGCTACTCAGGGCTGCAGAGATTGCCGGCGTGACTGAGTTTGCCAATAAGCATCCCAACGGTTTTGACATGGTCGTTGGCGAGCGTGGGCAAAATCTTTCCGGTGGCCAGCGCCAAAGCATTGCCCTGGCCCGTGCCTTGTTGATGAATCCGCCCATCCTGGTAATGGACGAACCATCAAGCTCCATGGATAACACCACTGAGCTGCGCATGAAAGAACAACTGAAAACTCAGTGTCAGGGCAAAACACTAATACTGGTGACCCACAAAGCCTCAATGCTCGAACTGGTTGATCGATTAATCGTTGTTGACAGTGGCCGTGTTGTTGCCGACGGCCCAAAAGATCAGGATTGCGGCGATAGGGATTTCAAAAATTTAAGAGAGGCGCCTGTGAAGTTCACCGATAAGCCAAACCAACCCCAAAAGGAATCGGATCAACCTGAGCTGGATCGCTCAGACCTGCAATTCAATCTTGACAATGATAGAGACGAGCGTGATGAGCCTCAGGTGTTGCCCGAAGATATGGAATATATCTCCGATACCAATGTTGCTCTGTTGACCAGAACGCCCAGGGGCGGCCGCCTGCTTATTTATACCATGCTGCTTGCGTTGTGCTCGGCCATTGTCTGGGCCAGTTACGCTCGACTCGATGAAATCACCCGAGGCCTCGGCACCGTTATCCCGTCATCACGTCTGCAGGTAGTACAAAACCTTGAGGGCGGGATTCTGGAAAAGATTTTCATCAAAGAAGGCGAACGGGTTAGCTCAGGGCAGCCCTTAATGCAGCTTGATGATACCCGCTTCTCCTCCAGCTTCCGCGAAAGCGCCATCGAGTATTACAGCGAGCTGGCCAAGGCCGCCCGACTCAAGGCGGAACTTTCCGGCAAGGCTCTGAGCTTCCCTGAAGAACTCAACGACTACCCCGATTACGTCAAACGGGAACGAGAGATATTTCGCCAGCGGGCTGACCGCTTCAACGCTGAGCTGAATGTCGCCAGTGAACAGGTCTCTCAGGCTCGCCATGAGTTGGGCAATGCCCGAGACCAGCTGAAATTCCTGATCACCAGTTTCCGGCTCGGCTATGACGAGCTGGAGCTGACCATCCCTCTTGCCCGGCAAGGTGTTGTCTCCAGAGTTGAGCTGCTTCAGTTAAGACAGCGGGTAAACGACCTAGAGTCGCAAAAACGCAAAACTGAGCTGAGTATCCCCAGGCTTAATGCCAGCTACCAGGAATCCCGAGCCCGCCGCGAAGAGATCATTCAGAAATACCGCAGTGAGATTGTTCAGGAACTAAAAGAGACCGAGGTCCATCTGGATCAGCTTGATGAGTCAAACATCGCCCTGGAAGACCAGGTTGAACGAACACTGATCCGCTCGCCAATGGATGGCATCGTGAAAAAAATTCACGTCACCACACTCGGCGGCGTCGTACAGCCAGGCATGAGCTTGCTGGAAATCGTTCCCCTGGAAGATAACTTGCTGATTGAAGCTCAGATTCAACCCAAAGACATCGGCTTTTTGCGTGAGGGCATGCGTGCCATCGTCAAACTGACTGCCTACGATTTTGCCATTTATGGCGGCCTTGAGGGTGAGGTGGAACATATAAGTGCAGACACTATCAAGGATGAGAAGGGCGAAAGTTTTTACATCGTGCGCGTCAGGACAAAAAGCAACTCCGTCGGCACGGAAGAAAAACCGCTTCTGATTATTCCGGGCATGAGAACCAACGTGGACATCATCACCGGTGACAAAACGCTGATGACTTATCTGCTTAAGCCAATCCTCAAAGCCAAGCAAAACGCACTGACAGAACGGTAA

Transcript

ANN35440-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9RCG7	Exotoxin translocation ATP-binding protein PaxB OS=Pasteurella aerogenes OX=749 GN=paxB PE=3 SV=1
P0DKX5	Cyclolysin secretion/processing ATP-binding protein CyaB OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=cyaB PE=3 SV=1
P0DKX6	Cyclolysin secretion/processing ATP-binding protein CyaB OS=Bordetella pertussis (strain ATCC 9797 / DSM 5571 / CCUG 30873 / LMG 14455 / NCTC 10739 / 18323) OX=568706 GN=cyaB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0015667 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03412 all species →	Peptidase_C39	Peptidase C39 family	Family	Interproscan
PF13437 all species →	HlyD_3	HlyD family secretion protein	Family	Interproscan
PF00664 all species →	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR005074 all species →	Domain	Peptidase C39, bacteriocin processing	Interproscan
IPR039421 all species →	Family	Type 1 protein exporter	Interproscan
IPR017750 all species →	Family	ATPase, type I secretion system	Interproscan
IPR006144 all species →	Conserved_site	Secretion protein HlyD, conserved site	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR010129 all species →	Family	Type I secretion membrane fusion protein, HlyD family	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24221 all species →	ATP-BINDING CASSETTE SUB-FAMILY B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0034040 all species →	Molecular Function	ATPase-coupled lipid transmembrane transporter activity	Interproscan
GO:0009306 all species →	Biological Process	protein secretion	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12541	lapB; ATP-binding cassette, subfamily C, bacterial LapB	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.