Gene detail

Detailed information of ANN35463-RA in Leptoseris scabra

Genomic Location: Scaffold_1650__1_contigs__length_25789:6826...8168
NR annotation: WP_269675036.1, UDP-N-acetylmuramate--L-alanine ligase [Endozoicomonas sp. GU-1]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4K6J4	UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=murC PE=3 SV=1
Q2S9Z3	UDP-N-acetylmuramate--L-alanine ligase OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=murC PE=3 SV=1
Q3K745	UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=murC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0016720 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01225 all species →	Mur_ligase	Mur ligase family, catalytic domain	Domain	Interproscan
PF02875 all species →	Mur_ligase_C	Mur ligase family, glutamate ligase domain	Domain	Interproscan
PF08245 all species →	Mur_ligase_M	Mur ligase middle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050061 all species →	Family	Peptidoglycan biosynthesis MurCDEF	Interproscan
IPR005758 all species →	Family	UDP-N-acetylmuramate--L-alanine ligase	Interproscan
IPR036565 all species →	Homologous_superfamily	Mur-like, catalytic domain superfamily	Interproscan
IPR036615 all species →	Homologous_superfamily	Mur ligase, C-terminal domain superfamily	Interproscan
IPR000713 all species →	Domain	Mur ligase, N-terminal catalytic domain	Interproscan
IPR004101 all species →	Domain	Mur ligase, C-terminal	Interproscan
IPR013221 all species →	Domain	Mur ligase, central	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43445 all species →	UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008763 all species →	Molecular Function	UDP-N-acetylmuramate-L-alanine ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0016881 all species →	Molecular Function	acid-amino acid ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01924	murC; UDP-N-acetylmuramate--alanine ligase	EC:6.3.2.8	Peptidoglycan biosynthesis and degradation proteins	ko01011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.