Gene detail

Detailed information of ANN35479-RA in Montipora grisea

Genomic Location: Scaffold_4596__1_contigs__length_31778:24469...27244
NR annotation: ONM39251.1, Glutamate synthase 1 [NADH] chloroplastic [Zea mays]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35479-RA

ATGCTGGGCGCCGAGGAGTTCGGCTTCTCGACCGCGCCGCTGATCACGCTCGGCTGCATCATGATGCGCAAGTGCCATCTCAACACCTGTCGGTCGGCATCGCCACCCAAGATCCGGATCTGCGGGCCAAGTTCGAGGGCGCCCCGGAGAAACGCGGCGGATCATGGCCGGCTTGGGCGTGGCGACGATCGAGGAGCTGGTCGGGCGCACCGATCTGTTCCGGCCCGAACTGGCGGTGCAGGACCAAAGGACCGAGGGTCTCGATCTCTCGGCGATGCTGCAACCGGCGCAAAGGAGGCACGAGGGCGTCGGCGTCACCAAGACGATCGAGCAGGACCACGCGCTGGAGCACGCGCTCGACAACGAACTGATCGCCCGCGCGCGGCCCGCCTTGGAACGGGGATCCAGAGTGCGGATCGAACTGCCGATCGAGAACACCACCGCGCGGTCGGCACGATGCTCAGCCACGAGCTGATGAAGGCGCGCGGCCAGCACGGTCTGGCCGACGACACGATCCACATCTCGCTTGCCGGCAGCGCCGGCCAGAGTCTCGGCGCGTTTCTCGCTCCCGGCATCACGATCGAACTCGAGGGCGACGGCAACGACTACGTCGGCAAGGGGCTGTCCGGCGGACGGCTCGTCCTCTACCCGCCGCGCCGGTCGCGTTTCGTCGCCGAGGACAACGTGCTGATCGGCAACGTGGCGCTCTACGGCGCCACCGGCGGCGAGGCGTTCTTCCGCGGCCGCGCCGCGGAGAGATTCTGCGTGCGCAACTCGGGCGCCAACGCGGTGATCGAGGGCATCGGCGATCACGGCTGCGAATACATGACCGGAGGTTGCGCCGTGATCCTGGGGCCCACGGGCCGCAACTTCGCCGCCGGCATGAGCGGCGGCATCGCGTGGGTCCTCGACCCCCGGCGCGAGCTGGCCCGCAACTGCAACGTGGAGATGGTGGGGCTGGCGCCTGTGGACCTCGAGTGCGCGGCGGAACTGCGGGAACTGGTGGAACGGCACGCCCGCTTCACCGGCTCGACCGTGGCCCGTCGGCTGCTCGAACGCTGGTCGAAGCGCAGCGCCAGTCATGCCGCACGACTACCGGCGGGTGCTGGAAGCGCGACGCGAAGCCCATCCAGAGGCCGAGGAAGCCGCCTAGGCACGGCGCCGGGCTGGTGCCTGACCGCTTCGGCGCGACACGAACTTCTGCCACGGGCTGCCAGGAGGCACGCGGATCACATGGGCAAGGACACCGGCTTCAAGGAGCACGCCCGCGTAGCGGTCCCGTACCAGGATCCGCTCATCCGCCTGACGCACCGACGGCGAGTTCCTGCAGCCCGTGCCGGAAGAGCATCTCGCCATGCAGGGCGCCCGCTGCATGGACTGCGGCGTGCCGTTCTGCCAGGCCGACGACGGCTGCCCGATCGACAACCTGATCCCGGAGTGGAACGACCTCGTCTACCAGGGCCGCTGGCGCGAGGCGCTGCGCAGGCTGAACGGACAAACAACTTCCCCGAGTTCACCGGCCGCGTCTGCCCTGCGCCTTGCGAGGGCGCCTGCGTGCTGGGAATCACCGACCCGGCGGTGACGATCAAGAACATCGAGAACGCGATCGTCGACCGAGGGTTCGAGGAGGGCTGGATCGTTCCCAGACCGCCGACGGCACGGACCGGCAAGAAAGTCGCGGTCATCGGCTCCGGCCCCTCCGGTCTGGCCGCCGCGGCGCAGTTGAACGCCGTCGGCCACCGGGTCGCGGTGTTCGAGCGCGAGGACCGCATCGGCGGCCTGCTCATGTACGGCATCCCCAACATGAAACTGGACAAGCGCCGGATCGTCGACCGCCGGATCGACCTGATGCGGGCCGAGGGCATCGAGTTCGTGACCGGTGCTCACGTCGGCCGGAATGTCGACATCGGCGACCTGCGGCCGCTGCTGGACGCCCATCTGCCAAGCGACGGCGCGAGAGTCGTCGCCCCCCCGATCACGGCCGAAGGCAAGAACGTGATCGTGATCGGCGGCGGCGACACCGGTGCCGACTGCATCGCGACGGCGCTTCGCCACGGCTGCGCTTCCCTGGTCAACTTCGAGCTCCTCGACCGGCCGCCCGACGTGCGCGCTGCGGACAATCCGTGGCCGGAATGGCCGCGCATCTTCCGCGTCGAATACGCCCATGCGGAGGCCGCGGCAAGGTTCGGCGCCGACCCGCGCGTGTTCTCGGTGCTCTCCAAACGCTTCGTGGACGACGGCGCCGGCCACGTCGCCGGCATCGAGACGGTGCGCGTCGCCTGGCGAAGGGACGAGACCGGCCGCTTCCAGATGGAGGAGCTGCCAGGCGCCGAGGAGACCTTCGAGGCCGACCTGGTGCTGCTGGCGATGGGGTTCCTCGGCCCCGAGAGCACACTCGCCGAGCAGCTGGGGCTGGCCACCGACGCCCGCGGCAACTTCGCAGCTCGGCCTGGGCACTACGCCACCTCGGTCGAAGGCGTGTTCGCGGCCGGCGACTGCCGCCGCGGCCAGAGTCTGATCGTGTGGGCGATCAACGAAGGGCGCGGCGCCGCGGCGCGCATCGACGAGCACCTGACCGGGACCACGGACCTGCCCTTGCCGTCGGCGCTGTGA

Transcript

ANN35479-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03460	Glutamate synthase [NADH], amyloplastic OS=Medicago sativa OX=3879 PE=1 SV=1
Q0DG35	Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0555600 PE=2 SV=2
Q0JKD0	Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0681900 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002031 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01493 all species →	GXGXG	GXGXG motif	Family	Interproscan
PF01645 all species →	Glu_synthase	Conserved region in glutamate synthase	Domain	Interproscan
PF14691 all species →	Fer4_20	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster	Domain	Interproscan
PF13450 all species →	NAD_binding_8	NAD(P)-binding Rossmann-like domain	Domain	Interproscan
PF07992 all species →	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002489 all species →	Domain	Glutamate synthase, alpha subunit, C-terminal	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR002932 all species →	Domain	Glutamate synthase domain	Interproscan
IPR036485 all species →	Homologous_superfamily	Glutamate synthase, alpha subunit, C-terminal domain superfamily	Interproscan
IPR051394 all species →	Family	Glutamate Synthase	Interproscan
IPR028261 all species →	Domain	Dihydroprymidine dehydrogenase domain II	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR023753 all species →	Domain	FAD/NAD(P)-binding domain	Interproscan
IPR009051 all species →	Homologous_superfamily	Alpha-helical ferredoxin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43100 all species →	GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0006537 all species →	Biological Process	glutamate biosynthetic process	Interproscan
GO:0015930 all species →	Molecular Function	glutamate synthase activity	Interproscan
GO:0016638 all species →	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35479-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.