Gene detail

Detailed information of ANN35497-RA in Leptoseris scabra

Genomic Location: Scaffold_1173__1_contigs__length_29478:9670...10872
NR annotation: WP_054554199.1, MULTISPECIES: replicative DNA helicase [Pseudoalteromonas]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8FB22	Replicative DNA helicase DnaB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=dnaB PE=3 SV=2
P0ACB0	Replicative DNA helicase DnaB OS=Escherichia coli (strain K12) OX=83333 GN=dnaB PE=1 SV=1
P0ACB1	Replicative DNA helicase DnaB OS=Shigella flexneri OX=623 GN=dnaB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012386 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03796 all species →	DnaB_C	DnaB-like helicase C terminal domain	Domain	Interproscan
PF00772 all species →	DnaB	DnaB-like helicase N terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007694 all species →	Domain	DNA helicase, DnaB-like, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007692 all species →	Family	DNA helicase, DnaB type	Interproscan
IPR007693 all species →	Domain	DNA helicase, DnaB-like, N-terminal	Interproscan
IPR016136 all species →	Homologous_superfamily	DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal	Interproscan
IPR036185 all species →	Homologous_superfamily	DNA helicase, DnaB-like, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30153 all species →	REPLICATIVE DNA HELICASE DNAB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006268 all species →	Biological Process	DNA unwinding involved in DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02314	dnaB; replicative DNA helicase	EC:5.6.2.3	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.