Gene detail

Detailed information of ANN35526-RA in Leptoseris scabra

Genomic Location: Scaffold_1845__1_contigs__length_24391:5108...7321
NR annotation: CAI4015416.1, unnamed protein product [Cladocopium goreaui]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35526-RA

ATGATCGTTGCCCTGCTGCTTTCGTCACACTTCTACCCGATTCACACGGCTGATTTCGGATGCTTTCCGTGTCGCTGTCACCAAAAGGATCACGGTGCAAAGCACCTTGCGAGTTGCAGCCTTGTAGGCGTTCTTCACCTCAAAGATGTGAGTTTGAGTGAGCAAAGCATCACAAGTGTTGCAGACGATGCCTTCACCTCTTCGAGGGGCTTGCAACGGTTATCGCTCTCTGGCAATCGGTTGTCATTTTTACCTGAGAAGGTGTTCGCTCCTTTGGACAGCTTGCAATTGCTGGACTTGGGCCGCTTGGGTTTGAAGCACTTGGAGTCTGACACATTTGCTGGGTTGTCAAGTTTGAGAATCTTGTCCCTCAGCCAAAACCGATTGAAGATGTTGCCAGAAGACTTGCTGCGCCCCATGCCAGCTCTGGAGCAATTGTTGCTGGGGGGCAAAACTGGTGAGTGGTTCCAACGGATCGTTGATGGAAATGAACTGAAAATACTTCCGCAAGAGCTTTTGCAGCACAGCCCGCGGCTACAAGTTCTCGATCTGCGCGAAAACAAGTTGACCTCGCTGCCACACAACGTCCTTGATAAAATTCCTTTGTTGGAGACCCTCGACCTTGCCTCAAACAAGCTGACTGAATTGCCAGGCGACATCTTTTCAGGGCTCAACAAACTCCAGGAGCTGGACCTGAGTCGGAACACTCTCAGTGAGTTGCCTGCTGAAGTTTTTTCCGGGCTCATCAACTTGCAGGAGCTGGACTTGTATCAAAACGAGCTCAGTGGGCTGCCTGCTGAAGTCTTTTCAGGACTCAGCAACTTGCGGGAGCTCGACCTAGGAAAGAACAAGCTCAGCGAGTTGCCTGCTGAAGTCTTCTCAGGTCTCAGCAGCTTGCAGAAGCTCAACCTGGGGTACAACTCGCTCACTCGGTTGCATGCTGGAGTCTTTTCAGGACTCAGCAACTTGCAGGAGCTTGACCTGTGGTCGAACTTGCTCAGTGAGTTGCCTGCTGAAGTCTTTGCAGGACTCAGCAACTTGCAGGAGCTTGACCTGCATCGCAACGATCTCAGCGAGTTGCCTGCTGAAGTCTTTGCAGGACTCAGCAACTTGCAGGAGCTTGACCTGCATCTCAACGATCTCAGCGAGTTGCCTGCTGAAGTCTTTTCCGGGCTCGGCAGGTTGCAGGAGCTCCACCTGGGGTACAACTCGCTCACTCGGTTGCATGCTGGAGTCTTTTCAGGACTCAGCAACTTGCAGGAGCTGGACCTGTGGTCCAACAAGCTTAGTGAGCTACCTGCTGAAGTCTTCTCAGGGCTCAGAAATTTGCAACATCTCGACCTGGGGTACAGTAAGTTGCCTGCCGAAGTGTGGGCCAATCTGTTTGCAGGGCTCAGCAAGTTGCAGGTGCTCATGCTGCATAAGAACAAACTCGGCGAGTTACCCGCTCAAGTCTGGGTCAATATGTTTTCAGGGCTCGGAAGCCTGCAAGAGCTTCGGCTGAACGAGAATGATCTCAGTGAGTTGCCTGCCGAAGTGTGGGCCCATCTCTTCGCAGGTCTTAGCAACTTGCGGAAGCTGAACCTGAGGTACAACAGGCTCGGCGAGTTGCCTTCTGAAGTCTGGTCCAAATCATTTGCAGGGCTCAGCCACTTGCAGGAGCTTGACTTGGGCGGAAACGATCTCAGTGAGTTGCATGCTGGAGTCTTTTCCACGCTGGGCAACCTGCGAAAACTTGTCCTCTATAGGTGCAGGCTGAACGAGTTGCCTCCTGAAGTCTGGGATCATCTGTTTACGGGGCTCGACAACTTGAGGTTGCTCTGGCTGGGTGACAACAAACTCGGCGAGTTGCCTTCTGAAGTCTGGTCCAAATCGTTTGCAGAGCTCAGCCACTTGCAGGAGCTTTACTTGGGCGGAAACGATCTCAGCAAGTTGCATGCTGAAGCCTTTTCCACGCTGGGCAACCTGCGAATTCTTGTCCTCGATGAGTGCAGGCTGAATGAGTTACCTGTCGAAGTCTGGGATCATCTGTTTGCAGGGCTCAGCAAGTTGCAGGTGCTCATGCTGCATAAGAACAAACTCGGCGAATTACCCGCTGAAGTCTGGGCCAATATGTTTTCAGGGCTCGGAAGCCTGCGGGACCTTTGGCTGTGGGGCAATGGTCTCAGTGAGTTGCCCGCAATTTGTTCGGCTATAAAGTGTCTCAACTTCTGA

Transcript

ANN35526-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0052506 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR050333 all species →	Family	Small Leucine-Rich Proteoglycans	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45712 all species →	AGAP008170-PA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35526-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.