Gene detail

Detailed information of ANN35530-RA in Leptoseris scabra

Genomic Location: Scaffold_1166__1_contigs__length_29535:10214...11653
NR annotation: WP_020585107.1, metalloprotease TldD [Endozoicomonas elysicola]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0AGG9	Metalloprotease TldD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=tldD PE=3 SV=1
P0AGG8	Metalloprotease TldD OS=Escherichia coli (strain K12) OX=83333 GN=tldD PE=1 SV=1
P0AGH0	Metalloprotease TldD homolog OS=Shigella flexneri OX=623 GN=tldD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0015721 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19289 all species →	PmbA_TldD_3rd	PmbA/TldA metallopeptidase C-terminal domain	Domain	Interproscan
PF19290 all species →	PmbA_TldD_2nd	PmbA/TldA metallopeptidase central domain	Domain	Interproscan
PF01523 all species →	PmbA_TldD_1st	PmbA/TldA metallopeptidase domain 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025502 all species →	Family	TldD	Interproscan
IPR035068 all species →	Homologous_superfamily	Metalloprotease TldD/PmbA, N-terminal	Interproscan
IPR045569 all species →	Domain	Metalloprotease TldD/E, C-terminal domain	Interproscan
IPR045570 all species →	Domain	Metalloprotease TldD/E, central domain	Interproscan
IPR051463 all species →	Family	Peptidase U62 metalloprotease	Interproscan
IPR002510 all species →	Domain	Metalloprotease TldD/E, N-terminal domain	Interproscan
IPR036059 all species →	Homologous_superfamily	Metalloprotease TldD/PmbA superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30624 all species →	UNCHARACTERIZED PROTEIN TLDD AND PMBA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03568	tldD; TldD protein	-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.