Gene detail

Detailed information of ANN35539-RA in Leptoseris scabra

Genomic Location: Scaffold_2321__1_contigs__length_19028:6823...10179
NR annotation: GLQ32180.1, hypothetical protein GCM10007876_26590 [Litoribrevibacter albus]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35539-RA

ATGCGGTTTCAGTTTCAAAGCTTTTATCGCCTCTCTCATATTGCAGCTCAGCTAGAGATAGCTAATTATTTCAACACTTTAGCGATCGCTCTAGAAACTGAGAGAAACCTCGTACCTACCATTGTGCAGGCGAATGATAATGAAGAAATACAAAATGCTATCGAGCAAAGCTACCTAGCCACAGATAACCACATCACTCGGTTAAAAGAGTACTTGCAGGTGCTCTCGGAAAGGGGGCAGTTAGAACAACATATTCGAGAAATGAATGCTCTGGTGGCGGATTTGGAGGAAATCTACCAGTTGCGTAAAAATAGCGAGTATGAATTTCAATTCGAAACGCTAAAAGCCTATAGCGATTTAATAGAAAGCAACCTTTCTATTATTCGTCAGTTGATGAGGCATACCAATAGTCACATTGTTCATTCGGAAGCCGATGCTTTTGATGCCTTATTGCTTTTGCGTGAATATGTGAGCCATGAGATTACGCTCATTCGCTACCTATCTCAAAAACCGATAATGACATCCCAGGATATTAGCTTGCTCAGTGGTTTTGTGGCGAAAGAACAAGCTTTGATTAATAACTTCCTTGTGGGTAATGCCAGTGGTGAGCTGATGCAAGCGATCCTAGAGCTTTTTAAAAACCCACATATTAATGAATTAAAAATTATGCGTCGTGATATTTTTTCACACATCCACAAAAGCGAACTTTTAGGGAAATTAACGCTTCTACTTAAGCAATCTCAAGAACCCAATGCCGCTGATTCTACAATACCGAACCGAGCAGATTTAATCACAGATATGCGAGAGCTTCTTCAGGATTATCAAGGACTAGAAGTACAGGCAAAAGATGAATATGATTTGTTAACGGCACTCACGCTTTCTTTCGATCGCTATGAAGAAACTTGGCGTGAGCAGGGAAATATTCATCAAAGCCAGATAGATTTGGATCAGCGCATTGTCGAGTTATGGAACTACTTGAGAAACTCACCTGAACTGATTCAGCGGGATTGGTTGGCACTTTCAGAGGGTGTCATTGGCGCTTTTAATCGTATTATTAATGATCTTCAGGAAACTATACGCCAGCAAGCACTAGCCAATAGTGAAAGGGCTCTTTACATCCTCGTATTTTATGGCGCCATAACCGCTCTGGTACTTTTCATATGCTATTTGTTTGGCTGGCTGATTTGCCGCCGCCTTGATGACGGTGTTGGCAGTATTGTCGCTTCGTTACAATCTGTTCTTACCGGTAGAAAACTGTCGACTGTTGATGACACCGCTTATCAGGATGAAATTGGAGAAGTGCATAAAGCCCTCAGGCAACTCTTGCATCAAAGAGCGTTAACCGAGGCGGCGCTGAAAGAAAGTGAGCAAAAGTTTATGGATGTTCTTTATGCGGCAGATAATCCTATTTTGCTGCTTGATACGGACCATTTTATTGACTGTAATGAGGCGACGCTGAAATTTTTAGGCTTTCATGAGAAAGGACAAATCATCAACCAAAGCTTGGCCAGTCTTTCTGCCGCTCAACAAGATGGCGGCGATGATGCCGAAAGTGCGGCTAAACAGATTTTACAAATTGCTTACGATAAAGGTTTCGTGCAAATCACTTGGCAGTTGTTGAACAGCGCCCAAGAAAATTTACCGACCGAGATGACTTTGTCGGTGATTCCCTTCAATGGCAAACGTATCCTCTATGTGACTTGGAAAGACATTCGAGCACGTTTGCGGGCAAAAGAGGCGCTGATAAAGTCTAAAGAAATTGCCGAAGCCGCAAGCCAAGCAAAAAGCACCTTCATGGCCAACATGTCCCATGAAATTCGTACTCCGCTCAATGGGGTTATGGGTATGAGCTCTTTATTGCTTGAAACAGAGTTGGCTGAAGATCAACGAGAGTATGTGCGTACGATCAGCAGTTCCGCCCAATCCCTGTTAGGAATTATTAATGATATTTTGGACTTCTCCAAGATTGAAGCAGGGGAGTTGGATATCAATCCCGTGCGTTTTAATCTCTATGATGAAATTTATAGTCTTGTAGAAGCGCTAGCGAAGAAGTCCACAGAAAAGCATGTGCTGCTCGAGCTTCGAATCGCTCCTGATTTGCCGAACTATCTTATTGGAGATCCTCAAAGAATCCGCCAGGTACTGACTAACTTAGTGACTAACGCCTTTAAATTTACACACAATGGTTTTGTCTTAATCAACATTAAAAATGAACACAGTAAAAATCGGGAAAAGATTGGTTTATGGATTTCTGTGGAAGATACAGGGATTGGTATTCACGATGATAAATTAAGCCGAGTCTTTGATGAGTTTACTCAAGAAGATGGCTCAACAACTCGTCAATATGGAGGGACGGGGCTTGGATTAACGATTTGCCGTCAGCTGACAGAGCTTATGGGCGGCCGTGTGATGGCCAGTAGTTATAAAGGTGTGGGGTCCATATTTGGACTCTATCTGACACTGGATATTGCTGAAGATCAACAGTTACCTATGCAGAGTGATTTCGATTTCACCCTACTCGAAGGCAAACGTTTGCTGCTGATCGATGAAAGTCGTGTCAGCGCAGATATTACGCGAGAAACCCTGATTTATTTTGGTATTCAGGTGACGGTTTGTGGACATGTGCCTGCGACGAAAGAAGATTGGAGTTTTTATTTAGACGATGACGTTGGCTATGACTGGGTGATTTTTGATCCTTCCCATGAAGATTTTGAGTACACAGAAAACCTGATTCACACCCTGTTTTCTATTCCTAGCTTAAGCAAAGCGGCTTTCATTGCGTTAGTCACGGATTCTGCCTCAACAAATCGTGATCAATTAAAAGCCCTCGGGGTTGTTGGCTATGCAGTTAAACCTTATCGTGGCTGGCACTTTGCTCAAATACTGGGTTTAACGCTGCTACATTTGCCTGAACTTAAAGGCAAAAAAATGATGACTCGAAACACCGTTGAAAATAATTGGCTAACCAACAAGCAGGATACCGCTTACCTCGCCAGTGTGTTGTTAGTTGAAGACAATGTGGTTAATCAACGCGTCGCGACAAAAATGCTAGAAAAACTGGGTTGTCGCGTTGATGTGGCTAACAATGGGCAAGAAGCCCTTGAACTTTGTCAGGATATTCAATATGACTTGGTGTTTATGGATTGCCAAATGCCAGTGATGGATGGATTTGAGGCGACCCAAGCGATTCGCAGCCAAGAAATTAGCCGACGTCAGCATACACCGATCGTCGCGCTTACGGCGAATGCAATGGAATCTGATCGACAAAAATGTATTGAAGTTGGTATGGATGATTTTTTATCTAAACCCGTGTCTCGCAGTTCTCTGGAGAAAGTGCTAGAAAATTTTTGTCGCTAG

Transcript

ANN35539-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54YZ9	Hybrid signal transduction histidine kinase J OS=Dictyostelium discoideum OX=44689 GN=dhkJ PE=3 SV=2
Q5A599	Histidine protein kinase NIK1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=NIK1 PE=1 SV=3
Q9F8D7	Sensor histidine kinase GacS OS=Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CFBP 6595 / CHA0) OX=1124983 GN=gacS PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006816 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08376 all species →	NIT	Nitrate and nitrite sensing	Family	Interproscan
PF02518 all species →	HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF00072 all species →	Response_reg	Response regulator receiver domain	Domain	Interproscan
PF13426 all species →	PAS_9	PAS domain	Domain	Interproscan
PF00512 all species →	HisKA	His Kinase A (phospho-acceptor) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036097 all species →	Homologous_superfamily	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	Interproscan
IPR005467 all species →	Domain	Histidine kinase domain	Interproscan
IPR011006 all species →	Homologous_superfamily	CheY-like superfamily	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR001789 all species →	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR004358 all species →	Domain	Signal transduction histidine kinase-related protein, C-terminal	Interproscan
IPR013587 all species →	Domain	Nitrate/nitrite sensing protein	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR003661 all species →	Domain	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45339 all species →	HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000155 all species →	Molecular Function	phosphorelay sensor kinase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35539-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.